View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291R-Insertion-10 (Length: 787)
Name: NF3291R-Insertion-10
Description: NF3291R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291R-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 122 - 774
Target Start/End: Complemental strand, 44262956 - 44262313
Alignment:
| Q |
122 |
gcctggtgctcctcaactaaattaattagtttattcttacaactagcaaaacacaccaacagacttggtgtaaaccaatatgctattaaacctccaaagc |
221 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44262956 |
gccttgtgctcctcaatgaaattaattagtttattcttacaactagcaaaacacaccaacagacttggtgtaaaccaatatgctatttaacctccaaagc |
44262857 |
T |
|
| Q |
222 |
tcctctccttagatctccttccttactatattgaacccaaaactctgctg---------taaatcgcttaactacacaaacagaacaacagcaattgcag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44262856 |
tcctctccttagatctccttccttactatattgaacccaaaactctgctgcaagctctgtaaatcgcttaactacacaaacagaacaacaacaattgcag |
44262757 |
T |
|
| Q |
313 |
tagtcatgccaaaccagactgtcctaatgcttgtaggaatgaaagcaggccatgtattctatacttatccattcgataactacttgcgaagattagagta |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44262756 |
tagtcatgccaaaccagactgtcctaatgcttgtaggaatgaaagcaggccatgtattctatacttatccattcgataactacttgcgaagattagagta |
44262657 |
T |
|
| Q |
413 |
attctattcctatccatccgataactgaaatgggacttaaagatacacatacatcccatcaattaatggcataacaaaccaatattcttggcacagtata |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44262656 |
attctattcctatccatccgataactgaaatgggacttaaagatacacatacatcccatcaattaatggcataacaaaccaatattcttggcacagtata |
44262557 |
T |
|
| Q |
513 |
tgagattggcacagtatatgagattagagtatcaaatgattaagtatcagcattgctttctataaaaaagcaggtcttgttgatcctttcaacactcttc |
612 |
Q |
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| T |
44262556 |
tga------------------gattagagtatcaaatgatgaagtatcagcattgctttctataaaaaagcaggtcttgttgatcctttcaacactcttc |
44262475 |
T |
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| Q |
613 |
aatcttcatgattgaaaattggcattaggaagtgattcagctcattgtaactggactagcaccaaatgcaactcagatggaaatgtaaagaagcttgatc |
712 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44262474 |
aatcttcatgattgaaaattggcattaggaagtgattcagctcattgtaactggactagcatcaaatgcaactcagatggaaatgtaaagaagcttgatc |
44262375 |
T |
|
| Q |
713 |
tctctcacaagaatctctgtggtacaatatccaatgatatagaaacactttaaagtctaacc |
774 |
Q |
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| T |
44262374 |
tctctcacaagaatctcagtggttcaatatccaatgatatagaaacactttaaagtctaacc |
44262313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 167 - 363
Target Start/End: Complemental strand, 56165447 - 56165239
Alignment:
| Q |
167 |
gcaaaacacaccaacagacttggtgtaaaccaatatgctattaaacctccaaagctcctctcc----ttagatctccttccttactatattgaacccaaa |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| || | ||| ||||| ||||||||||||||||||||||| |
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| T |
56165447 |
gcaaaacacaccaacagacttggtgtaaaccaatatgctatt-aacctccaaagttccacttcttaattaaatctctttccttactatattgaacccaaa |
56165349 |
T |
|
| Q |
263 |
actctg---------ctgtaaatcgcttaactacacaaacagaacaacagcaattgcagtagtcatgccaaaccagactgtcctaatgcttgtaggaatg |
353 |
Q |
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| |||| |||| ||||||||||| ||| |||| ||||| || ||| |||| ||||| |||| ||| | ||||||||||| ||||||||| |
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| T |
56165348 |
attctgctgcaagctctgtcaatcgcttaaccgcacgaacaaaacaagaggaatcgcagcagtcacaccaatccaaatggtcctaatgctggtaggaatg |
56165249 |
T |
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| Q |
354 |
aaagcaggcc |
363 |
Q |
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||| |||||| |
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| T |
56165248 |
aaaccaggcc |
56165239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 762
Target Start/End: Complemental strand, 39470460 - 39470350
Alignment:
| Q |
652 |
gctcattgtaactggactagcaccaaatgcaactcagatggaaatgtaaagaagcttgatctctctcacaagaatctctgtggtacaatatccaatgata |
751 |
Q |
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||||||||||||||||| | | | |||||||||| | ||||| ||| |||| |||||||||||||||||||||||| |||||| | ||||| ||||| |
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| T |
39470460 |
gctcattgtaactggaccggaatcgaatgcaactcggctggaactgtggagaaccttgatctctctcacaagaatctcagtggtatagtatccggtgata |
39470361 |
T |
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| Q |
752 |
tagaaacactt |
762 |
Q |
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|| ||| |||| |
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| T |
39470360 |
tacaaagactt |
39470350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 613
Target Start/End: Complemental strand, 39470547 - 39470480
Alignment:
| Q |
544 |
tcaaatgattaagtatcagcattgctttctataaaaaagcaggtcttgttgatcctttcaacactcttca |
613 |
Q |
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||||||||| |||||||||| ||||||||| | ||| | |||||||||||||||||| ||||| ||||| |
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| T |
39470547 |
tcaaatgatgaagtatcagctttgctttctttgaaaga--aggtcttgttgatcctttgaacacccttca |
39470480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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