View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291R-Insertion-11 (Length: 751)
Name: NF3291R-Insertion-11
Description: NF3291R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291R-Insertion-11 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 699; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 9 - 751
Target Start/End: Original strand, 9126727 - 9127469
Alignment:
| Q |
9 |
ctttttatgaattcatgtgacttgaagatgatggtggggaaaataatcaatgcatacataattcttcgcttcgcatttgtctaaagtggattccttaggt |
108 |
Q |
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| T |
9126727 |
ctttttatgaattcatgtgacttgaagatgatggtggggaaaataatcaatgcatacataattcttcgcttcgcatttggctaaagtggattccttaggt |
9126826 |
T |
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| Q |
109 |
cacaagatactacacaaccttggcttaaacggcgaaaatgttaaacagctagagtcctagatttcttaatctgtatgctttaatggcattgataattgat |
208 |
Q |
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| T |
9126827 |
cacaagatactatacaaccttggcttaaacggcgaaaatgttaaacagctagagtcctagatttcttaatctgtatgctttaatggcattgataattgat |
9126926 |
T |
|
| Q |
209 |
gcaattgtttgtataattgatagatcaacagatagttctggctatttattttaattgcagaaatcatattttcaaatgtaaaattatgattcttaacaag |
308 |
Q |
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| T |
9126927 |
gcaattgtctgtataattgatagatcaacagattgttctggctatttattttaattgcagaaatcatattttcaaatgtaaaattatgattcttaacaag |
9127026 |
T |
|
| Q |
309 |
ttcttataaccatttcttaaggtgcaatacccccaatgacattgattacaatatattttctcgattcaaaatttcaaacaaattttatagtgcagaatga |
408 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
9127027 |
ttcttataaccacttcttaaggtgcaatacccccaatgacattgattacaatatattttctcaagtcaaaatttcaaacaaattttatagtgcagaatga |
9127126 |
T |
|
| Q |
409 |
gatatgcacaaaattatgtagagtctaatatattactaaacaattccattacatatgcaaactcaaccccttagtttgaccaaaagggactaaaagcaaa |
508 |
Q |
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| T |
9127127 |
gatatgcacaaaattatgtagagtctaatatattactaaacaattccattacatatgcaaactcaaccccttagtttgacccaaagggactaaaagcaaa |
9127226 |
T |
|
| Q |
509 |
acagttattcattttctcagagaatataggagttaggtaaagaaatgttttcaatctgcagttacatatgttattcttcgttggctgatacttcatcgaa |
608 |
Q |
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| T |
9127227 |
acaattattcattttctcagagaatataggagttaggtaaagaaatgttttcaatctgcagttacatattttattcttcgtcggctgatacttcatcgaa |
9127326 |
T |
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| Q |
609 |
tttatgtattaatgtacacgtgtttgaaagattcactttctcctccgctgcccatattatcacaaagtacgctgaagcttgtcgtgttatacgtgtctca |
708 |
Q |
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| T |
9127327 |
tttatgtattaatgtacacgtgtttgaaagattcactttctcctccgctgcccatattatcacaaagtacgctgaagcttgtcgtgttatacgtgtctca |
9127426 |
T |
|
| Q |
709 |
caagtcatcttttcctccgatttcttgattctcgtcaattcct |
751 |
Q |
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| T |
9127427 |
caagtcatcttttcctccgatttcttgattctcgtcaattcct |
9127469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 551 - 733
Target Start/End: Complemental strand, 9169972 - 9169788
Alignment:
| Q |
551 |
aaatgttttcaatctgcagttacatatgttattcttcgttggctgatacttcatcgaatttatgtattaatgta-cacgtgtttgaaagattcacttt-c |
648 |
Q |
| |
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|||| |||||||||||||||||||||| ||||||||| |||||||||| | ||||||||||| || |||| || || ||||||||||||| |||||| | |
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| T |
9169972 |
aaatattttcaatctgcagttacatattttattcttcattggctgatattccatcgaatttaagtcctaatctagcatgtgtttgaaagatccacttttc |
9169873 |
T |
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| Q |
649 |
tcctccgctgcccatattatcacaaagtacgctgaagcttgtcgtgttatacgtgtctcacaagtcatcttttcctccgatttct |
733 |
Q |
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| T |
9169872 |
tcatccgctacccgtattatcaagaactacactgaagctcgtcgtgttatacgtgtctcagaagtcatcttttcctccgatttct |
9169788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 464 - 534
Target Start/End: Complemental strand, 9173291 - 9173222
Alignment:
| Q |
464 |
tgcaaactcaaccccttagtttgaccaaaagggactaaaagcaaaacagttattcattttctcagagaata |
534 |
Q |
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| T |
9173291 |
tgcaaacttaaacctttagtttgaccaaa-gggactaaaagcaaaacaaatattcattttctcagagaata |
9173222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 464 - 531
Target Start/End: Original strand, 9157119 - 9157185
Alignment:
| Q |
464 |
tgcaaactcaaccccttagtttgaccaaaagggactaaaagcaaaacagttattcattttctcagaga |
531 |
Q |
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| T |
9157119 |
tgcaaacttaaacctttagtttgaccaaa-gggactaaaagcaaaacaaatattcattttctcagaga |
9157185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 9181917 - 9181953
Alignment:
| Q |
256 |
attttaattgcagaaatcatattttcaaatgtaaaat |
292 |
Q |
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| T |
9181917 |
attttgattgcagaaatcatattttcaaatgtaaaat |
9181953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 3355125 - 3355025
Alignment:
| Q |
195 |
cattgataattgatgcaattgtttgtataattgatagatcaacagatagttctggctatttattttaattgcagaa--at-catattttcaaatgtaaaa |
291 |
Q |
| |
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||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||| ||||| |||||| || || |||||||||||||||||| |
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| T |
3355125 |
cattgataattgatgcaattgtttgtacaatagatagatcaacaggctgttcttcctattgattttgattgcataatcatatatattttcaaatgtaaaa |
3355026 |
T |
|
| Q |
292 |
t |
292 |
Q |
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| T |
3355025 |
t |
3355025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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