View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291R-Insertion-18 (Length: 273)
Name: NF3291R-Insertion-18
Description: NF3291R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291R-Insertion-18 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 909711 - 909975
Alignment:
| Q |
9 |
gtgcagtggtaggtttttagtttctatacaacgattctggcttaagagtttacaaattgaggttcctgaataaattgaactatgatttatatgtttaata |
108 |
Q |
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| T |
909711 |
gtgcagtggtaggtttttagtttctatacaacgattctggcttaagagtttacaaattgaggttcctgaataaattgaactatgatttatatgtttaata |
909810 |
T |
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| Q |
109 |
agagggtatatgcatttcttatggaaatacatctcacataaagttaaactctgaatgtgatagaaaatgtttatgcttttttatacgactgatttttgca |
208 |
Q |
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| T |
909811 |
agagggtatatgcatttcttatggaaatatatctcacataaagttaaactctgaatgtgatagaaaatgtttatgcttttttatacgactgatttttgca |
909910 |
T |
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| Q |
209 |
ctttgttgatttttagtagatattggaaagctagaaatgatgtaatcttcattatcttgactgta |
273 |
Q |
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| T |
909911 |
ctttgttgatttttagtagatattggaaagcttgaaatgatgtaatcttcattatcttgactgta |
909975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 273
Target Start/End: Complemental strand, 662234 - 661970
Alignment:
| Q |
9 |
gtgcagtggtaggtttttagtttctatacaacgattctggcttaagagtttacaaattgaggttcctgaataaattgaactatgatttatatgtttaata |
108 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||||| ||||||||||||||||||||||||||| | |
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| T |
662234 |
gtgcagtggtagttttttagtttctatacaacgagtctggcttaggagtttgcaaattgagattcctgagtaaattgaactatgatttatatgtttacga |
662135 |
T |
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| Q |
109 |
agagggtatatgcatttcttatggaaatacatctcacataaagttaaactctgaatgtgatagaaaatgtttatgcttttttatacgactgatttttgca |
208 |
Q |
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| T |
662134 |
agagggtatatgaatttcttatggaaatatatctcacatgaagttaaactgtgaatgtgatagaaaatgtttatgcttttttatatgactgatttttgca |
662035 |
T |
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| Q |
209 |
ctttgttgatttttagtagatattggaaagctagaaatgatgtaatcttcattatcttgactgta |
273 |
Q |
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| T |
662034 |
ctttgttgatttttagtagatattggaaagcttgaaatgatgtaatcttcactgtcttgactgta |
661970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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