View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3291R-Insertion-3 (Length: 975)

Name: NF3291R-Insertion-3
Description: NF3291R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3291R-Insertion-3
NF3291R-Insertion-3
[»] chr4 (4 HSPs)
chr4 (41-131)||(33250304-33250397)
chr4 (596-658)||(33250164-33250225)
chr4 (903-951)||(33249992-33250039)
chr4 (500-541)||(24413232-24413273)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 5e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 33250397 - 33250304
Alignment:
Q  41 tggaaagagtgtttaatttgtgagttatgtatgtcactcaagcggggaagc---ggatttgtatcctctcctaccatttcttttatgttgttgg 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  33250397 tggaaagagtgtttaatttgtgagttatgtatgtcactcaagcggggaagcataggatttgtatcctctcctaccatttcttttatgttgttgg 33250304  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 596 - 658
Target Start/End: Complemental strand, 33250225 - 33250164
Alignment:
Q  596 ctagccggctaacttcaatccgaagtttattgagcactcattcgttccgcaacgctcgacata 658  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||    
T  33250225 ctagccggctaacttcaatccgaagttcattgagcactca-tcgttccgcaacgcttgacata 33250164  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 903 - 951
Target Start/End: Complemental strand, 33250039 - 33249992
Alignment:
Q  903 gttgtttctgattagagaattgccctgcaaatagatgataccctcacgc 951  Q
    |||||||||||||||||||||||||||| | |||||||| |||||||||    
T  33250039 gttgtttctgattagagaattgccctgc-agtagatgattccctcacgc 33249992  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 24413232 - 24413273
Alignment:
Q  500 aggaagtgaaaccttgcttctatgtgtttccttcctccatgt 541  Q
    ||||||||||||||||||||||||||||| |||  |||||||    
T  24413232 aggaagtgaaaccttgcttctatgtgtttacttattccatgt 24413273  T

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