View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291R-Insertion-4 (Length: 965)
Name: NF3291R-Insertion-4
Description: NF3291R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291R-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 353 - 948
Target Start/End: Original strand, 54478530 - 54479121
Alignment:
| Q |
353 |
ttcaatataaagcttcatcataatatttggaatttgtttccaattaactacaatctattgcaggtccacaagttttgcataagtacgtgtatctagtttt |
452 |
Q |
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| T |
54478530 |
ttcaatataaagcttcatcataatatttggaatttgtttccaattaactacaatctattgcaggtccacaagttttgcataagt----gtatctagtttt |
54478625 |
T |
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| Q |
453 |
gacaaaccttttagtcgtccaatgagcaaattagtcattattttattttctataatgtacgatactacatcaatattaaagaaaaactgttcttaaagca |
552 |
Q |
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| T |
54478626 |
gacaaaccttttagtcgtccaatgagcaaattagtcattattttattttctataatgtacgatactacatcaatattaaagaaaaactgttcttaaagca |
54478725 |
T |
|
| Q |
553 |
tgaaaataatgcaaatatatattaattatannnnnnnnnnggaggcagtgataattcaatgaagaaagctttttgtaacatatt---ttaaattcattga |
649 |
Q |
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| T |
54478726 |
tgaaaataatgcaaatatatattaattata-tatttttttggaggcagtgataattcaatgaagaaagctttttgtaacatattttattaaattcattga |
54478824 |
T |
|
| Q |
650 |
agaaatcttttttgtaaaatattttaaagtataaatatttgtatttgagcattgctttaaataatatgcatacaataagttgatcacttcaaagttaaag |
749 |
Q |
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| T |
54478825 |
agaaatcttttttgtaaaatattttaaagtataaatatttgtatttgagcattgctttaaataatatgcatacaataagttgatcacttcaaagttaaag |
54478924 |
T |
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| Q |
750 |
atcaaagtcnnnnnnncattctctttcccattaaatttcctcacattgctcactcacactcacatcagaacannnnnnnnnnnnnnnnnnnnnnnnatta |
849 |
Q |
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| T |
54478925 |
atcaaagtc-tgttttcattctctttcccattaaatttcctcacattgctcactcacactcgcatcagaacattcttttctttttcttttctctctatta |
54479023 |
T |
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| Q |
850 |
actcactccctcttactctttcaacacatcgatgggatccctttcagagaaatcatgaatggctttgaagtaactcgagatgg-aaaagtgtagtcatcc |
948 |
Q |
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| T |
54479024 |
actcactccctcttattctttcaacacatcgat-ggatccc-ttcagagatatcatgaatggctttgaagtaactcgagatggaaaaagtgtagtcatcc |
54479121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 214 - 362
Target Start/End: Original strand, 54478361 - 54478509
Alignment:
| Q |
214 |
aatgattgatcagtagaaataattagcagttgcagttatgaagactgttaattagaatttaaaagttctttaacttggctttttgtctaaaatcttgatc |
313 |
Q |
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| T |
54478361 |
aatgattgatcagtagaaataattagcagttgcagttatgaagactgttaattagaatttaaaagttctttaacttggctttttgtctaacatcttgatc |
54478460 |
T |
|
| Q |
314 |
tgcatcctcgtagaaccaaacaagtgctatctgcttgtcttcaatataa |
362 |
Q |
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| T |
54478461 |
tgcatcctcgtagaaccaaacaagtgctatctgcttgtcttcaatataa |
54478509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 54478163 - 54478286
Alignment:
| Q |
8 |
acttccgctagctagaaacatttaatagtgagaagacatcaaaataatgttgcgagcaaagnnnnnnngagataatcaaatcctcaaaatcatgtaccaa |
107 |
Q |
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| T |
54478163 |
acttccgctagctagaaacatttaatagtgagaagacatcaaaataatgttgcgagcaaagaaaaaaagagataatcaaatcctcaaaatcatgtaccaa |
54478262 |
T |
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| Q |
108 |
aattagaaggaatcttgctttgtc |
131 |
Q |
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| T |
54478263 |
agttagaaggaatcttgctttgtc |
54478286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 44590237 - 44590293
Alignment:
| Q |
302 |
aaaatcttgatctgcatcctcgtagaaccaaacaagtgctatctgcttgtcttcaat |
358 |
Q |
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||||||| ||||||||||||||||| |||||||||||||| ||| ||| |||||||| |
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| T |
44590237 |
aaaatctggatctgcatcctcgtagcaccaaacaagtgctgtctccttatcttcaat |
44590293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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