View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291R-Insertion-5 (Length: 965)
Name: NF3291R-Insertion-5
Description: NF3291R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291R-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 613; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 7 - 813
Target Start/End: Complemental strand, 11730097 - 11729288
Alignment:
| Q |
7 |
caatactctccttgagattgatatcttctatcaaatcgttaaactcgactatcgccactttaacatttttcaaccaagggagaatcttttcagagctacg |
106 |
Q |
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| T |
11730097 |
caatactctccttgagattgatatcttctatcaaatcgttaaactcgactatcgctactttaacatttttcaaccaaggaagaatcttttcagagctacg |
11729998 |
T |
|
| Q |
107 |
gaagtgacnnnnnnnnnnnnnnnnnactgtttcatcgatctcgttaaggttgttactaatttggtcgatgtcaactcctgataaccgatttactaggggt |
206 |
Q |
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| T |
11729997 |
gaagtgacttttttgtgctttttttactgtttcatcgatctcgttaaggttgttcctaagttggtcgatgtcaactcctgataaccgatttactaggggt |
11729898 |
T |
|
| Q |
207 |
tcttgggagctcataattaattgttggatgttggagattgaatggaatataatttctacttccattgatttaatatgatcgtgtgtatgtgtgaaaatag |
306 |
Q |
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| T |
11729897 |
tcttgggagctcttaattaattgttggatgttggagattgaatggaatataatttctacttccattgatttaatatgatcgtgtgtatgtgtgaaaatag |
11729798 |
T |
|
| Q |
307 |
tgttggtattcaaaaaatgatggatgagtgctttggtaattggggtggaagaacaagataatactcgctccctattgtatgtgctgctgggttaagagaa |
406 |
Q |
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| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11729797 |
tattagtattcaaaaaatgatggatgagtgctttggtaattggggtggaagaacaagataatactcgctccctattgtatgtgttgctgggttaagagaa |
11729698 |
T |
|
| Q |
407 |
agtcttatgttaataagatctagaacacttgagcaacaattcttgattacaactacagctgaaaatggtttagacacacacgtaaatgcaaaaaggtaaa |
506 |
Q |
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| T |
11729697 |
agtcttatgttaataagatctagaacacttgagcaacaattcttgattacaactacagctgaaaatggtttagacacacacgtaaatgcaaaaaggtaaa |
11729598 |
T |
|
| Q |
507 |
agaaataatacaaaaa--ttgttagatcgaatatcgtgattatggtttccccaacttgtgtgtctgagtttttaatgattattatcattttgtctatcga |
604 |
Q |
| |
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|||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
11729597 |
agaaataatacaaaaaatttgttagatcgaatgtcgtgatcatggtttccccaacttgtgtgtctgaatttttaatgattattatcattttatctatcga |
11729498 |
T |
|
| Q |
605 |
tcnnnnnnnttagtgcataattttttaaatatttaaatgacatgtattatatgtgtgtgttcaaatcatttttgtctgtacaccnnnnnnnnnntcattt |
704 |
Q |
| |
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| T |
11729497 |
ccaaaaaaattagtgcataattttttaaatatttaaatgacatgtattatatgtgcgtgttcaaatcatttttgtttgtacaccaaaaaaaaaatcattt |
11729398 |
T |
|
| Q |
705 |
ttgtttggggttgtgatcaagcaactattgttctaggaacccacaacaattaattaagtactatatccactaaatgaggtttctctatataaatt-aatg |
803 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||| |
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| T |
11729397 |
ttgtttggggttgtaatcaagcaactattgttctaggaacccacaacaattaattaagtactatatccactaaatgagatttgtctatatagattaaatg |
11729298 |
T |
|
| Q |
804 |
acgccatcaa |
813 |
Q |
| |
|
|||||||||| |
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|
| T |
11729297 |
acgccatcaa |
11729288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 267 - 475
Target Start/End: Complemental strand, 11753758 - 11753549
Alignment:
| Q |
267 |
tccattgatttaatatgatcgtgtgtatgtgtgaaaatagtgttggtattcaaaaaatgatggatgagtgctttggtaattggggtggaagaacaagata |
366 |
Q |
| |
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||||||||||| |||||||||||||||||| |||| || | || ||||| |||| | |||| |||| |||||||||||||||||| ||||||||||||| |
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| T |
11753758 |
tccattgattttctatgatcgtgtgtatgtgagaaactattatttgtattaaaaatacgatgaatgattgctttggtaattggggttgaagaacaagata |
11753659 |
T |
|
| Q |
367 |
atactcgctccctat--tgtatgtgctgctgggttaagagaaagtcttatgttaataagatctagaacacttgagcaacaattcttgattacaactacag |
464 |
Q |
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| T |
11753658 |
ctactctctgcctatattgtatgtgctgctgtattaagagaaagtcttatgttaataagatttagaacacttgagc-acaattcttgattataattacag |
11753560 |
T |
|
| Q |
465 |
ctgaaaatggt |
475 |
Q |
| |
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|||||||||| |
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| T |
11753559 |
atgaaaatggt |
11753549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 615 - 677
Target Start/End: Complemental strand, 11753388 - 11753326
Alignment:
| Q |
615 |
tagtgcataattttttaaatatttaaatgacatgtattatatgtgtgtgttcaaatcattttt |
677 |
Q |
| |
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| T |
11753388 |
tagtgcataatttttgaaatatttaaatgacatgtattgtatgtgcgtgttcaaatcattttt |
11753326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 884 - 956
Target Start/End: Complemental strand, 11729216 - 11729140
Alignment:
| Q |
884 |
atgtgcctctaatattgcaactacccttcatcagacctttaca---ttacttacatgtct-ctctttacatgctcaa |
956 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| |
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| T |
11729216 |
atgtgcctctaataatgcaactacccttcatcagacctttacaatttaacttacatgtctcctctttacatgctcaa |
11729140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 635035 - 634991
Alignment:
| Q |
558 |
acttgtgtgtctgagtttttaatgattattatcattttgtctatc |
602 |
Q |
| |
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|||||||| | ||||||||||||||||||||| |||||||||||| |
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| T |
635035 |
acttgtgtttatgagtttttaatgattattattattttgtctatc |
634991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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