View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3291R-Insertion-6 (Length: 940)

Name: NF3291R-Insertion-6
Description: NF3291R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3291R-Insertion-6
NF3291R-Insertion-6
[»] chr6 (3 HSPs)
chr6 (9-903)||(1871592-1872484)
chr6 (85-210)||(24803917-24804043)
chr6 (129-185)||(3816851-3816906)
[»] chr4 (8 HSPs)
chr4 (125-239)||(29779085-29779199)
chr4 (73-240)||(11302285-11302452)
chr4 (125-234)||(17898164-17898273)
chr4 (79-225)||(46382667-46382811)
chr4 (74-163)||(2256498-2256586)
chr4 (126-241)||(32817482-32817602)
chr4 (127-190)||(47514286-47514349)
chr4 (76-117)||(45776882-45776923)
[»] chr2 (4 HSPs)
chr2 (83-237)||(43987831-43987985)
chr2 (125-241)||(42650211-42650327)
chr2 (81-160)||(3551529-3551607)
chr2 (76-241)||(36306860-36307021)
[»] chr3 (8 HSPs)
chr3 (142-238)||(41115394-41115490)
chr3 (78-174)||(46870312-46870407)
chr3 (81-223)||(32111891-32112032)
chr3 (75-238)||(49829088-49829250)
chr3 (73-181)||(32246735-32246844)
chr3 (79-160)||(25129631-25129712)
chr3 (138-181)||(47101231-47101274)
chr3 (146-192)||(835854-835900)
[»] chr1 (6 HSPs)
chr1 (75-191)||(47978494-47978608)
chr1 (75-238)||(30220242-30220404)
chr1 (177-241)||(15515099-15515163)
chr1 (129-186)||(47836665-47836721)
chr1 (144-190)||(26605057-26605103)
chr1 (130-179)||(35215431-35215480)
[»] chr5 (6 HSPs)
chr5 (125-190)||(1879097-1879162)
chr5 (144-241)||(32421961-32422058)
chr5 (125-225)||(5465514-5465614)
chr5 (167-241)||(5970049-5970123)
chr5 (143-241)||(6095360-6095458)
chr5 (136-184)||(3233200-3233248)
[»] chr7 (4 HSPs)
chr7 (165-241)||(35105138-35105214)
chr7 (143-210)||(7168863-7168930)
chr7 (125-192)||(26984558-26984625)
chr7 (95-184)||(22915895-22915983)
[»] chr8 (4 HSPs)
chr8 (125-184)||(4344704-4344763)
chr8 (130-192)||(24774851-24774913)
chr8 (142-191)||(43361442-43361491)
chr8 (130-192)||(44121600-44121662)


Alignment Details
Target: chr6 (Bit Score: 751; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 9 - 903
Target Start/End: Complemental strand, 1872484 - 1871592
Alignment:
Q  9 agtaatgtatcttgtaattcatgataatattagaatcgcagtcaaaaaacagttctttcgattcttagcatatgtttggtttcaattttggaggatcaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1872484 agtaatgtatcttgtaattcatgataatattagaatcgcagtcaaaaaacagttctttcgattcttagcatatgtttggttacaattttggaggatcaaa 1872385  T
Q  109 agagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaattgattctgcatggagctagaatt 208  Q
    || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1872384 agtgatttt-agaaggtgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaattgattctgcatggagctagaatt 1872286  T
Q  209 tgcagtttttggcttctgcatttgattttagcccttgttaaatcctcttatacacatatccttcgaaacataaataacattatattcaactcgtttttat 308  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1872285 tgcagtttttggcttctgcaattgattttagtccttgttaaatcctcttatacatatatccttcgaaacataaataacattatattcaactcgtttttat 1872186  T
Q  309 ccggaatccggaatcaattttacagaatcaatttttggcgccggg-aaaaccaaacatacaatagtaagaatcttggatttgataaacatggtgcaaaca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1872185 ccggaatccggaatcaattttacagaatcaatttttggcgccgggcaaaaccaaacatacaatagtaagaatct-ggatttgataaacatggtgcaaaca 1872087  T
Q  408 tcaacttcctagtacaatggagagatccaaggtagttgattgaatttggtctagagcctaaactgtttcaaagccagacttgtctctttctatgtcaatg 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1872086 tcaacttcctagtacaatggagagatccaaggtagttgattgaatttggtttagagcctaaactgtttcaaagccagacttgtctctttctatgtcaatg 1871987  T
Q  508 ttatcttaccatcaatatgtctagttgtctactagatcatgttgtgtgacaattgcgtttgctttataaggtttttggttttgtttgatatttcattatc 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1871986 ttatcttaccatcaatatgtctagttgtctactagatcatgttgtgtgacaattgcatttgctttataaggtttttggttttgtttgatatttcattatc 1871887  T
Q  608 attccacatactttataggagagtgtgaatacaaacnnnnnnnnatgttgaatatcttttagtttttggacagttgggcagtgatagtgaggtccaccaa 707  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1871886 attccacatactttataggagagtgtgaatacaaac-tttttttatgttgaatatcttttagtttttggacagttgggcagtgatagtgaggtccaccaa 1871788  T
Q  708 agttggtgtaatagaagaatatatctatcttttttatgaattttgattcaaaatattgggttgtagatgctttttatgggggccactttttaatcctccc 807  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  1871787 agttggtgtaatagaagaatatatctatc-tttttatgaattttgattcaaaatatt-ggttgtagatgctttttat-ggggccactttttaatcctccc 1871691  T
Q  808 atctgt-catgttgaaatt-taagacaaattttc-ttaattttggtcataattac-atcaatttaatctcaaaattgactttagggaggggtgttcaaaa 903  Q
    |||||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  1871690 atctgtccatgttgaaattaaaagacaaattttctttaattttggtcataattacaatcaa-ttaatctcaaaattgactttagggaggggtgttcaaaa 1871592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 24804043 - 24803917
Alignment:
Q  85 tggtttcaattttggaggatcaaaagagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttg----cttgt 180  Q
    |||||||||||||||||| ||||||| ||| |  ||| | |||||||||| || ||||||||||||||||||||||  | |||||||||||    |||||    
T  24804043 tggtttcaattttggagg-tcaaaagtgatct--agaggttgtagaattgattatatcatgtttggatgatttaaagtacaattgattttgcttgcttgt 24803947  T
Q  181 agaattgattctgcatggagctagaatttg 210  Q
    ||||||||||||   || ||||||||||||    
T  24803946 agaattgattctatttgaagctagaatttg 24803917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 3816906 - 3816851
Alignment:
Q  129 gaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaat 185  Q
    |||||| |||||| ||||||||||||||||||||| ||| || ||||||||||||||    
T  3816906 gaattgattttattatgtttggatgatttaaaagagaatgga-tttgcttgtagaat 3816851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 5e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 29779199 - 29779085
Alignment:
Q  125 tgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaattgattctgcatggagctagaatttgcagtttttggcttc 224  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || |||||||||||| || ||||  ||||    
T  29779199 tgtagaattgattttatcatgtttggatgatttaaaagagaattgattttgcttgtagaattgattctacttgaagctagaatttgtagcttttcacttc 29779100  T
Q  225 tgcatttgattttag 239  Q
    |||| ||||||||||    
T  29779099 tgcaattgattttag 29779085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 11302285 - 11302452
Alignment:
Q  73 ttagcatatgtttggtttcaattttggaggatcaaaagagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaaagaaaattgatt 172  Q
    |||||||||||||||||||||||||||||  ||||||  || || |||||| ||||||||||  |||||||||||||||||||||||   | | ||| ||    
T  11302285 ttagcatatgtttggtttcaattttggagagtcaaaattga-ttctagaagttgtagaattg-atttatcatgtttggatgatttaatgaagatttggtt 11302382  T
Q  173 ttgcttgtagaattgattctgcatggagctagaa--tttgcagtttttggcttctgcatttgattttagc 240  Q
    |||||||| ||||||||||| | || ||||||||  |||| || ||||||||||| || |||||||||||    
T  11302383 ttgcttgtggaattgattctacttgaagctagaatttttgtagcttttggcttctacacttgattttagc 11302452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 17898273 - 17898164
Alignment:
Q  125 tgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaattgattctgcatggagctagaatttgcagtttttggcttc 224  Q
    |||||||||| || ||||||||||||||| ||||||  | |||||||||||||||||||||||||||| | || ||| | ||| |  |||||||||||||    
T  17898273 tgtagaattgattgtatcatgtttggatggtttaaagtataattgattttgcttgtagaattgattctacttgaagcaacaatatatagtttttggcttc 17898174  T
Q  225 tgcatttgat 234  Q
    | || |||||    
T  17898173 tacaattgat 17898164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 46382667 - 46382811
Alignment:
Q  79 tatgtttggtttcaattttggaggatcaaaagagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgctt 178  Q
    ||||||| |||||||||||||||| ||||||  ||||   ||| | ||||||||||  | |||||| ||| || |||||||| || ||||||||||| ||    
T  46382667 tatgtttagtttcaattttggagggtcaaaattgattca-agaggttgtagaattgagtatatcat-tttagaggatttaaaggataattgattttgttt 46382764  T
Q  179 gtagaattgattctgcatggagctagaatttgcagtttttggcttct 225  Q
    ||| |||||||||| ||||||  |||||||||  |||||||||||||    
T  46382765 gtaaaattgattctacatggatttagaatttgttgtttttggcttct 46382811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 2256586 - 2256498
Alignment:
Q  74 tagcatatgtttggtttcaattttggaggatcaaaagagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaaaga 163  Q
    ||||||||||||||| |||||| |||||| ||||||| || ||||| | | |||||||||| |||||||||||||  |||||||||||||    
T  2256586 tagcatatgtttggtatcaattatggagggtcaaaagcga-ttttaaaggttgtagaattgattttatcatgtttaaatgatttaaaaga 2256498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 32817602 - 32817482
Alignment:
Q  126 gtagaattgtttttatcatgttt-ggatgatttaaa---agaa-aattgattttgcttgtagaattgattctgcatggagctagaatttgcagtttttgg 220  Q
    ||||||||| ||||||||||||| ||||||||||||   |||| | ||||||||| |||||||||||||||| | ||  ||||||||||| || ||||      
T  32817602 gtagaattgattttatcatgtttgggatgatttaaactcagaatatttgattttgtttgtagaattgattctacttgaggctagaatttgtagcttttta 32817503  T
Q  221 cttctgcatttgattttagcc 241  Q
    ||||| || ||||||||||||    
T  32817502 cttctacaattgattttagcc 32817482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 47514349 - 47514286
Alignment:
Q  127 tagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaattgatt 190  Q
    |||||||| |||||| |||||| |||||||||||  | |||||||||| |||||||||||||||    
T  47514349 tagaattgattttatgatgtttagatgatttaaagtagaattgatttttcttgtagaattgatt 47514286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 45776923 - 45776882
Alignment:
Q  76 gcatatgtttggtttcaattttggaggatcaaaagagatttt 117  Q
    |||||||||||||||||||||||| || ||||||| ||||||    
T  45776923 gcatatgtttggtttcaattttggtgggtcaaaagtgatttt 45776882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 83 - 237
Target Start/End: Original strand, 43987831 - 43987985
Alignment:
Q  83 tttggtttcaattttggaggatcaaaagagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtag 182  Q
    |||||||||||||||||||| |  ||||    || |||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||  ||| ||    
T  43987831 tttggtttcaattttggagggttcaaagttgattctagaagttgtagaattgattttatcatgtttggatgatttaaaagataattgattttctttgcag 43987930  T
Q  183 aattgattctgcatg-gagctagaatttgcagtttttggcttctgcatttgatttt 237  Q
    ||||||||||  |||  ||||||| |||| || ||||||||||| || ||||||||    
T  43987931 aattgattct-aatgaaagctagagtttgtagcttttggcttctacacttgatttt 43987985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 125 - 241
Target Start/End: Original strand, 42650211 - 42650327
Alignment:
Q  125 tgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaattgattctgcatggagctagaatttgcagtttttggcttc 224  Q
    |||||||||| |||||| ||||||||||||||||||  | ||||||||| | |||||| ||||||||| | || || || |||||| || ||||| ||||    
T  42650211 tgtagaattgattttatgatgtttggatgatttaaagtataattgatttcgtttgtaggattgattctacttgaagttataatttgtagcttttgtcttc 42650310  T
Q  225 tgcatttgattttagcc 241  Q
    | || ||||||||||||    
T  42650311 tccaattgattttagcc 42650327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 3551529 - 3551607
Alignment:
Q  81 tgtttggtttcaattttggaggatcaaaagagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaa 160  Q
    ||||||||||||||||| ||||||| |||| || || |||||| | || ||||| |||||| ||||||||||||||||||    
T  3551529 tgtttggtttcaattttagaggatctaaagtga-ttctagaagttataaaattgattttatgatgtttggatgatttaaa 3551607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 241
Target Start/End: Original strand, 36306860 - 36307021
Alignment:
Q  76 gcatatgtttggtttcaattttggaggatcaaaagagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttg 175  Q
    |||| ||||||||||||||| | |||| | ||||| |||| | |||   ||| |||||| |||||  |||||||||||||||| |    |||||||||||    
T  36306860 gcatgtgtttggtttcaattctagagggttaaaagtgattct-agagattgtggaattgattttacgatgtttggatgatttatag---aattgattttg 36306955  T
Q  176 cttgtagaattgattctgcatggagctagaatttgcagtttttggcttctgcatttgattttagcc 241  Q
     ||||| |||||||||| | |||||||| |||||  || ||||| ||||| || ||||||||||||    
T  36306956 attgtacaattgattctacttggagctacaatttatagcttttgtcttctacaattgattttagcc 36307021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 6e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 41115490 - 41115394
Alignment:
Q  142 catgtttggatgatttaaaagaaaattgattttgcttgtagaattgattctgcatggagctagaatttgcagtttttggcttctgcatttgatttta 238  Q
    |||||||||||| ||||||  | |||||||||||||||||||||||||||| | || |||||||||||| || ||||||||||| || |||||||||    
T  41115490 catgtttggatgttttaaagtagaattgattttgcttgtagaattgattctacttgaagctagaatttgtagcttttggcttctacaattgatttta 41115394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 46870312 - 46870407
Alignment:
Q  78 atatgtttggtttcaattttggaggatcaaaagagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaaagaaaattgatttt 174  Q
    ||||||||| ||||||||||||||| ||||||| |||| | ||| | |||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  46870312 atatgtttgatttcaattttggagggtcaaaagtgattat-agatgttgtagaattgattttatcatgtttggatgatttaaaggataattgatttt 46870407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 32111891 - 32112032
Alignment:
Q  81 tgtttggtttcaattttggaggatcaaaagagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgt 180  Q
    ||||||||||||||| | |||||||||||| |||| || || | | || ||||| ||||||  || ||||||||||||||  |||||||||||||  |||    
T  32111891 tgtttggtttcaattctagaggatcaaaagtgattctt-gaggttctaaaattgattttatgttggttggatgatttaaagtaaaattgattttgtatgt 32111989  T
Q  181 agaattgattctgcatggagctagaatttgcagtttttggctt 223  Q
    |||||||||||| | || ||||| |||||| || |||||||||    
T  32111990 agaattgattctacttgaagctacaatttgtagcttttggctt 32112032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 238
Target Start/End: Complemental strand, 49829250 - 49829088
Alignment:
Q  75 agcatatgtttggtttcaattttggaggatcaaaagagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaaagaaaattgatttt 174  Q
    ||||| ||||||||||||||| | |||| ||||||| |||| | ||| | |||  ||||| || ||| ||||||||||||||||||  | |||  |||||    
T  49829250 agcatgtgtttggtttcaattctagagggtcaaaagtgattct-agaggttgtttaattgattatatgatgtttggatgatttaaagtagaatcaatttt 49829152  T
Q  175 gcttgtagaattgattctgcatggagctagaatttgcagtttttggcttctgcatttgatttta 238  Q
    ||||||| |||||||||| | || ||||| |||||| |||| || |||||| || |||||||||    
T  49829151 gcttgtacaattgattctacttgaagctacaatttgtagttcttagcttctacaattgatttta 49829088  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 32246844 - 32246735
Alignment:
Q  73 ttagcatatgtttggtttcaattttggaggatcaaaagagatttttagaaggtgtagaattg--tttttatcatgtttggatgatttaaaagaaaattga 170  Q
    ||||||||||||||| ||||| |||||| | ||||||  || ||||||||| ||||||||||   ||||||||| |||| |||||||||| || |||| |    
T  32246844 ttagcatatgtttggattcaaatttggaaggtcaaaattga-ttttagaagttgtagaattgatattttatcatatttgaatgatttaaaggagaattaa 32246746  T
Q  171 ttttgcttgta 181  Q
    ||||| |||||    
T  32246745 ttttgtttgta 32246735  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 25129712 - 25129631
Alignment:
Q  79 tatgtttggtttcaattttggagga-tcaaaagagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaa 160  Q
    ||||||||||||||||||| ||||  ||||||  |||| | ||| | |||||||||| |||||||||||||||||||||||||    
T  25129712 tatgtttggtttcaattttcgaggggtcaaaattgattct-agaggttgtagaattgattttatcatgtttggatgatttaaa 25129631  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 47101231 - 47101274
Alignment:
Q  138 ttatcatgtttggatgatttaaaagaaaattgattttgcttgta 181  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||    
T  47101231 ttatcatgtttagatgattaaaaagagaattgattttgcttgta 47101274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 835854 - 835900
Alignment:
Q  146 tttggatgatttaaaagaaaattgattttgcttgtagaattgattct 192  Q
    ||||||||||||||| || ||||||||||  ||||||||||||||||    
T  835854 tttggatgatttaaaggagaattgattttcgttgtagaattgattct 835900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 47978608 - 47978494
Alignment:
Q  75 agcatatgtttggtttcaattttggaggatcaaaagagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaaagaaaattgatttt 174  Q
    |||||||||||| ||||||||||||||| ||||||| |||| | ||||| |||||| || |||| |||| |||||||| ||||||| || ||||||||||    
T  47978608 agcatatgtttgttttcaattttggagggtcaaaagtgattct-agaagttgtagagttatttt-atcaagtttggattatttaaaggagaattgatttt 47978511  T
Q  175 gcttgtagaattgattc 191  Q
     ||||||||||||||||    
T  47978510 ccttgtagaattgattc 47978494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 75 - 238
Target Start/End: Complemental strand, 30220404 - 30220242
Alignment:
Q  75 agcatatgtttggtttcaattttggaggatcaaaagagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaaagaaaattgatttt 174  Q
    ||||| |||||| |||||||||| |||  ||||||| |||| | ||| | |||| ||||| || ||| ||||||||||||||||||  | ||||||||||    
T  30220404 agcatgtgtttgatttcaattttagagagtcaaaagtgattct-agaggttgtataattgattatatgatgtttggatgatttaaagtagaattgatttt 30220306  T
Q  175 gcttgtagaattgattctgcatggagctagaatttgcagtttttggcttctgcatttgatttta 238  Q
    ||||||| |||||||||| | || ||||| |||||| |||| || |||||| || |||||||||    
T  30220305 gcttgtataattgattctacttgaagctataatttgtagttctttgcttctacaattgatttta 30220242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 15515163 - 15515099
Alignment:
Q  177 ttgtagaattgattctgcatggagctagaatttgcagtttttggcttctgcatttgattttagcc 241  Q
    |||||||||||||||| |||| |||||||||||| || |||||||||||||| || |||||||||    
T  15515163 ttgtagaattgattctacatgaagctagaatttgtaggttttggcttctgcaattaattttagcc 15515099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 47836665 - 47836721
Alignment:
Q  129 gaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaatt 186  Q
    |||||| |||||||||||||| |||||| ||| |||||||||||||||||||||||||    
T  47836665 gaattgattttatcatgtttg-atgattaaaaggaaaattgattttgcttgtagaatt 47836721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 26605057 - 26605103
Alignment:
Q  144 tgtttggatgatttaaaagaaaattgattttgcttgtagaattgatt 190  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  26605057 tgttaggatgatttcaaagataattgattttgcttgtagaattgatt 26605103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 35215431 - 35215480
Alignment:
Q  130 aattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttg 179  Q
    ||||| ||||||||||||| ||||||||||| |  |||||||||||||||    
T  35215431 aattgattttatcatgttttgatgatttaaaggtgaattgattttgcttg 35215480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 1879097 - 1879162
Alignment:
Q  125 tgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaattgatt 190  Q
    |||||||||| ||||||||||||||||||| |||||||| |||| ||||| |||||||||||||||    
T  1879097 tgtagaattgattttatcatgtttggatgagttaaaagagaatttattttacttgtagaattgatt 1879162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 32422058 - 32421961
Alignment:
Q  144 tgtttggatgatttaaaagaaaattgattttgcttgtagaattgattctgcatggagctagaatttgcagtttttggcttctgcatttgattttagcc 241  Q
    |||||||||||||||||  |||||| ||||| ||||||||||||||||| | || ||||| |||||| ||  |||||||||| || ||||||||||||    
T  32422058 tgtttggatgatttaaagtaaaattaattttacttgtagaattgattctccttgaagctacaatttgtagcatttggcttctacaattgattttagcc 32421961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 5465614 - 5465514
Alignment:
Q  125 tgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaattgattctgcatggagctagaatttgcagtttttggcttc 224  Q
    |||||||||| |||||| || ||||||||| |||||  | |||| ||||| | ||||||||| ||||| | || ||||| |||||| |||||||||||||    
T  5465614 tgtagaattgattttatgatatttggatgaattaaagtataattaattttccctgtagaattaattctacttgaagctacaatttgtagtttttggcttc 5465515  T
Q  225 t 225  Q
    |    
T  5465514 t 5465514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 5970123 - 5970049
Alignment:
Q  167 ttgattttgcttgtagaattgattctgcatggagctagaatttgcagtttttggcttctgcatttgattttagcc 241  Q
    ||||||| ||||| ||||| |||||| | || || |||||||||||| ||||||||||| || ||||||||||||    
T  5970123 ttgatttagcttgcagaatggattctacttgaagttagaatttgcagcttttggcttctacagttgattttagcc 5970049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 6095458 - 6095360
Alignment:
Q  143 atgtttggatgatttaaaagaaaattgattttgcttgtagaattgattctgcatggagctagaatttgcagtttttggcttctgcatttgattttagcc 241  Q
    |||||||| |||||| ||  | ||||||||||| |||||||||| ||||| |  | |||||  ||||| |||||||||||||| ||||| |||||||||    
T  6095458 atgtttggttgatttgaagtagaattgattttgattgtagaatttattctactcgaagctacgatttgtagtttttggcttctacattttattttagcc 6095360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 3233200 - 3233248
Alignment:
Q  136 ttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaa 184  Q
    |||||||||||||| | |||||||| || ||||||||||||||||||||    
T  3233200 ttttatcatgtttgaaagatttaaaggagaattgattttgcttgtagaa 3233248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 35105138 - 35105214
Alignment:
Q  165 aattgattttgcttgtagaattgattctgcatggagctagaatttgcagtttttggcttctgcatttgattttagcc 241  Q
    |||||||||||||||||||||||||||| | || ||||| |||||| ||||||||| |||| || |||| |||||||    
T  35105138 aattgattttgcttgtagaattgattctacttgaagctataatttgtagtttttggtttctacaattgactttagcc 35105214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 7168863 - 7168930
Alignment:
Q  143 atgtttggatgatttaaaagaaaattgattttgcttgtagaattgattctgcatggagctagaatttg 210  Q
    ||||||||||||||||||  | ||||||||||||| |||||||||||||||| |  ||||||||||||    
T  7168863 atgtttggatgatttaaattagaattgattttgctagtagaattgattctgcctaaagctagaatttg 7168930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 26984625 - 26984558
Alignment:
Q  125 tgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaattgattct 192  Q
    |||||||||| |||||| ||||||| ||||||||||  | | ||||||||| ||||||||||||||||    
T  26984625 tgtagaattgattttatgatgtttgaatgatttaaagtagacttgattttgtttgtagaattgattct 26984558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 22915983 - 22915895
Alignment:
Q  95 tttggaggatcaaaagagatttttagaaggtgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaa 184  Q
    |||||||| ||||||| |||| | ||||  |||||||||| ||||||||| |||||||||||| |  ||||||| |||||| ||||||||    
T  22915983 tttggagggtcaaaagtgattat-agaacttgtagaattgattttatcatatttggatgatttgagggaaaattaattttgtttgtagaa 22915895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 4344704 - 4344763
Alignment:
Q  125 tgtagaattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaa 184  Q
    ||||| |||| |||||  |||||||||||||||||||||||||||||||||||| |||||    
T  4344704 tgtagtattgattttacaatgtttggatgatttaaaagaaaattgattttgcttatagaa 4344763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 24774851 - 24774913
Alignment:
Q  130 aattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaattgattct 192  Q
    ||||| ||||| ||||||||||||||||||| || |||||| ||| |||||||||||||||||    
T  24774851 aattgattttagcatgtttggatgatttaaatgagaattgagtttacttgtagaattgattct 24774913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 43361491 - 43361442
Alignment:
Q  142 catgtttggatgatttaaaagaaaattgattttgcttgtagaattgattc 191  Q
    |||||||||||| ||||||| ||| || ||||||||||||||||||||||    
T  43361491 catgtttggatgttttaaaataaatttaattttgcttgtagaattgattc 43361442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 44121662 - 44121600
Alignment:
Q  130 aattgtttttatcatgtttggatgatttaaaagaaaattgattttgcttgtagaattgattct 192  Q
    ||||| ||||||| ||||||||||||  |||||| ||||||||||| ||||| | ||||||||    
T  44121662 aattgattttatcgtgtttggatgatcaaaaagacaattgattttgtttgtaaagttgattct 44121600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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