View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3291R-Insertion-7 (Length: 910)

Name: NF3291R-Insertion-7
Description: NF3291R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3291R-Insertion-7
NF3291R-Insertion-7
[»] chr2 (5 HSPs)
chr2 (10-493)||(7873235-7873704)
chr2 (589-796)||(7872828-7873037)
chr2 (9-112)||(14107035-14107138)
chr2 (9-77)||(37771304-37771372)
chr2 (9-136)||(7695340-7695467)
[»] scaffold0063 (1 HSPs)
scaffold0063 (9-164)||(57392-57547)
[»] chr4 (2 HSPs)
chr4 (9-176)||(38640125-38640291)
chr4 (10-73)||(53814151-53814214)
[»] scaffold0050 (1 HSPs)
scaffold0050 (7-135)||(36143-36271)
[»] chr3 (8 HSPs)
chr3 (20-171)||(14755849-14756000)
chr3 (10-77)||(40024136-40024203)
chr3 (10-118)||(25647154-25647262)
chr3 (7-93)||(14193434-14193520)
chr3 (8-90)||(47235045-47235128)
chr3 (604-647)||(824528-824571)
chr3 (7-190)||(37122720-37122903)
chr3 (23-77)||(24282865-24282919)
[»] chr6 (2 HSPs)
chr6 (9-147)||(20702437-20702575)
chr6 (10-112)||(31303523-31303627)
[»] chr5 (3 HSPs)
chr5 (14-176)||(13954916-13955078)
chr5 (20-93)||(7392688-7392761)
chr5 (10-95)||(12566633-12566718)
[»] chr1 (5 HSPs)
chr1 (8-112)||(16146849-16146952)
chr1 (14-94)||(7857022-7857102)
chr1 (15-107)||(52277913-52278004)
chr1 (14-77)||(24658295-24658358)
chr1 (11-53)||(46815062-46815104)
[»] chr7 (6 HSPs)
chr7 (10-77)||(34389405-34389472)
chr7 (15-112)||(3477727-3477824)
chr7 (12-77)||(42533938-42534003)
chr7 (11-145)||(7191105-7191239)
chr7 (603-665)||(3475841-3475902)
chr7 (597-647)||(1319485-1319535)
[»] chr8 (2 HSPs)
chr8 (14-185)||(10249038-10249209)
chr8 (20-59)||(1578868-1578907)


Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 493
Target Start/End: Complemental strand, 7873704 - 7873235
Alignment:
Q  10 gaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgcag 109  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||     
T  7873704 gaacaaccacaaccaccacgatccttatgacgacaaaccatccgaaagttcgttgaagaaggattaatcgtaaatgaaagagaggttgccacacctacaa 7873605  T
Q  110 ccgtcggaagtagatcacacatatcgatgccacacatcgcaccctccacatcacatgtccgttaccatcactgacctccccaaatcacccaacaacaacc 209  Q
    |||| ||||||||||||||||||||| ||||||||||| |||              ||||||||||||||||||||||||| ||||||||||||||||||    
T  7873604 ccgttggaagtagatcacacatatcggtgccacacatcacac--------------gtccgttaccatcactgacctccccgaatcacccaacaacaacc 7873519  T
Q  210 tacaccttccgccgccggaaaccagaccacacatgacaccaccttcactacacaaccagcacggagaaaccctccaacacataacaccacctccgcctca 309  Q
    |||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7873518 tacaccttccgctgccggaaaccagaccacacacggcaccaccttcactgcacaaccagcacggagaaaccctccaacacataacaccacctccgcctca 7873419  T
Q  310 caaaaaggacaaacaacctagtcaaaacccaaccgctctagttgccaaaagcgaggccgcacacgcagcagcagagtgcggactgctgcccacgcaacaa 409  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||    
T  7873418 caaaaagcacaaaccacctagtcaaaacccaaccgctccagttgccaaaagcgaggtcgcacacgcagcagcagagtgcggactgctgcccacacagcaa 7873319  T
Q  410 caaccaccgcaaggccacaccaagacaaaccagcagcaacaactagatgatagacgaaagcagccaggaagcaggagaaacgaa 493  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7873318 caaccaccgtaaggccacaccaagacaaaccagcagcagcaactagatgatagacgaaagcagccaggaagcaggagaaacgaa 7873235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 589 - 796
Target Start/End: Complemental strand, 7873037 - 7872828
Alignment:
Q  589 acaacaatgggggttgaagaaggtggtgcgcagacgaagtctcgtcgcaccaccgctgctatgatctacatcttgagtggcttgtgggagnnnnnnntga 688  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||  |          ||    
T  7873037 acaacaatgggg-ttgaagaaggtggtgcggagacgaagtctcgtcgcaccaccgctgctaggatctacatcttgagcggcttgtttggattgtgggaga 7872939  T
Q  689 aa----gagaaagaaggggggaagtgtagagagaggttagagggtcaaaatgttaga--gagaaaattgttttcctttcaattaatactataaacattac 782  Q
    ||    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||  | |||||||||||||||||| | |||    
T  7872938 aaaaatgagaaagaaggggggaagtgtagagagaggttagagggtcaaaatgttagagagagaaaattgttt--ccttcaattaatactataaatactac 7872841  T
Q  783 ttttcaaagtatta 796  Q
     |||||||||||||    
T  7872840 -tttcaaagtatta 7872828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 14107035 - 14107138
Alignment:
Q  9 cgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgca 108  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||  |||||||||||| | ||||||| || |||||||||||||   |||||| ||||    
T  14107035 cgaacaaccacaatcaccatgatccttacgacgacaaacgatccgggagttcgttgaaggaagattaatcgtgaatgaaagagatgccaccacacttgca 14107134  T
Q  109 gccg 112  Q
    ||||    
T  14107135 gccg 14107138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 37771304 - 37771372
Alignment:
Q  9 cgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaat 77  Q
    ||||||||||||  ||||||||| ||||| |||||||||||||||  |||||||||||  |||||||||    
T  37771304 cgaacaaccacacacaccacgattcttacaacgacaaacgatccgggagttcgttgaaagaggattaat 37771372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 7695467 - 7695340
Alignment:
Q  9 cgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgca 108  Q
    |||||||| |||||||||| |||||||| || || ||||||||    | ||| |||||| | ||||||| || |||||||||||||| ||  ||| ||||    
T  7695467 cgaacaactacaaccaccatgatccttatgaagagaaacgatctaggatttctttgaagcatgattaatcgtgaatgaaagagatgtcgctccacgtgca 7695368  T
Q  109 gccgtcggaagtagatcacacatatcga 136  Q
    |  | ||||| |||||||||||||||||    
T  7695367 gttgccggaaatagatcacacatatcga 7695340  T

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Target: scaffold0063 (Bit Score: 68; Significance: 7e-30; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 57547 - 57392
Alignment:
Q  9 cgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||| ||||||||| || || ||||||||| | ||||||| ||||    
T  57547 cgaacaaccacaaccaccacgatccttacgacgacaaacgatccgggagtttgttgaaggaggattaatcgtgaaagaaagagatatcgccacacttgca 57448  T
Q  109 gccgtcggaagtagatcacacatatcgatgccacacatcgcaccctccacatcaca 164  Q
    |||| || ||  | |||||| |||||| | ||||||||| |  |||||||| ||||    
T  57447 gccgccgaaaacatatcacaaatatcggtaccacacatcacctcctccacaccaca 57392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 38640125 - 38640291
Alignment:
Q  9 cgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgca 108  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||||  | |||||||||||||| |  |||||||||    
T  38640125 cgaacaaccacaaccaccacgatccttacgacgacaaacgattcgggagttcgttgaaggaggattaatcatgaatgaaagagatgtcgttacacctgca 38640224  T
Q  109 gccgtcggaagtagatcacacatatcgatgccacacatcgcaccctccacatcacatgtccgttacca 176  Q
    | ||  |||   | |||||||||||||   ||||||||| | ||||||||| ||||| ||||| ||||    
T  38640225 gtcgctggacacaaatcacacatatcggcaccacacatc-ccccctccacaccacatatccgtcacca 38640291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 53814151 - 53814214
Alignment:
Q  10 gaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggat 73  Q
    |||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||| |||||    
T  53814151 gaacaaccacaaccaccacgatccttacgacgacgaacaatccgagagtgcgttgaaggaggat 53814214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 36271 - 36143
Alignment:
Q  7 cacgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||  | |||| |||||||   ||||||||||    
T  36271 cacgaacaaccacaaccaccacgatccttacgacgacaaacgatccaggagttcgttgaaggaggattaatcatgaatggaagagataccgccacacctg 36172  T
Q  107 cagccgtcggaagtagatcacacatatcg 135  Q
    | ||||| | ||   ||||||||||||||    
T  36171 ccgccgtggaaaccggatcacacatatcg 36143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 4e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 14755849 - 14756000
Alignment:
Q  20 aaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgcagccgtcggaag 119  Q
    ||||||||| || |||||||||| |||||||| | ||||||||||||| | |||||||  | ||||||| ||||| |||||||| | || ||||| |||     
T  14755849 aaccaccacaatgcttacgacgaaaaacgatctggaagttcgttgaaggatgattaatcatgaatgaaaaagatgatgccacacgtacaaccgtctgaaa 14755948  T
Q  120 tagatcacacatatcgatgccacacatcgcaccctccacatcacatgtccgt 171  Q
    |||||||||||||||  | ||||||||||| ||||||||| |||||| ||||    
T  14755949 tagatcacacatatccgtaccacacatcgccccctccacaccacatgaccgt 14756000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 40024136 - 40024203
Alignment:
Q  10 gaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaat 77  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  40024136 gaacaaccacaaccatcacgatccttacgacgacaaacgatccgagagtttgttgaaggaggattaat 40024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 25647262 - 25647154
Alignment:
Q  10 gaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgcag 109  Q
    |||||| ||||||||||||| ||||||||| |||||||||||||  ||| |||||||| | |||||||  | |||| ||||||| | |||||||||||||    
T  25647262 gaacaaacacaaccaccacggtccttacgatgacaaacgatccgggagtccgttgaaggatgattaatcatgaatggaagagatatcgccacacctgcag 25647163  T
Q  110 ccgtcggaa 118  Q
    |||| ||||    
T  25647162 ccgtaggaa 25647154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 14193520 - 14193434
Alignment:
Q  7 cacgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagat 93  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||  |  ||||||||| | ||||||| || |||| |||||||    
T  14193520 cacgaacaaacacaaccaccacgatccttacgacgacaaacgatccgggatctcgttgaagtatgattaatcgtgaatggaagagat 14193434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 47235128 - 47235045
Alignment:
Q  8 acgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagtt-cgttgaagaaggattaattgtaaatgaaaga 90  Q
    |||||||||||||||||||||||||||||| || || ||||| |||| |||| |||||||| ||||||||| ||  ||||||||    
T  47235128 acgaacaaccacaaccaccacgatccttacaacaacgaacgacccgagagttgcgttgaaggaggattaatcgtggatgaaaga 47235045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 604 - 647
Target Start/End: Original strand, 824528 - 824571
Alignment:
Q  604 gaagaaggtggtgcgcagacgaagtctcgtcgcaccaccgctgc 647  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
T  824528 gaagaaggtggtgcggagacgaagtctcgtcgcaccaccactgc 824571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 190
Target Start/End: Complemental strand, 37122903 - 37122720
Alignment:
Q  7 cacgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctg 106  Q
    ||||||||||| | | || || ||||||||||||||||||||||  |  ||||||||  || |||||||||  | ||||||||||||||  |||||| ||    
T  37122903 cacgaacaaccgccatcatcatgatccttacgacgacaaacgatatgggagttcgttccaggaggattaatcatgaatgaaagagatgtcaccacacttg 37122804  T
Q  107 cagccgtcggaagtagatcacacatatcgatgccacacatcgcaccctccacatcacatgtccgttaccatcactgacctcccc 190  Q
    ||||||    || | |||||||| |||| |  ||||||||| | ||||||||| | || |||||| |||| ||| |||| ||||    
T  37122803 cagccgcaaaaaatggatcacacgtatcaagaccacacatcaccccctccacaccgcacgtccgtcaccaccaccgaccacccc 37122720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 24282919 - 24282865
Alignment:
Q  23 caccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaat 77  Q
    |||||||||||||||||| || ||| |||||||||| | |||||| |||||||||    
T  24282919 caccacgatccttacgacaacgaacaatccgaaagtgcattgaaggaggattaat 24282865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 20702437 - 20702575
Alignment:
Q  9 cgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgca 108  Q
    ||||||||||| ||| |||||||||||||||  ||||||||||||  |||||||||||| |||||||||  | ||||||| |||||   |||||||||||    
T  20702437 cgaacaaccacgacctccacgatccttacgataacaaacgatccgggagttcgttgaaggaggattaatcatgaatgaaatagatgccaccacacctgca 20702536  T
Q  109 gccgtcggaagtagatcacacatatcgatgccacacatc 147  Q
    || |||||||   |||||||||||||||  |||||||||    
T  20702537 gctgtcggaaccggatcacacatatcgacaccacacatc 20702575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 31303627 - 31303523
Alignment:
Q  10 gaacaaccacaa-ccaccacgatccttacgacgacaaacgatccgaaagtt-cgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgc 107  Q
    |||||||||||| ||| || ||||||||| ||||| |||||| |||||||| |||||||| ||||||||| ||  | |||| ||||||  | ||||||||    
T  31303627 gaacaaccacaaaccatcatgatccttacaacgacgaacgattcgaaagttgcgttgaaggaggattaatcgtggaggaaaaagatgtcacaacacctgc 31303528  T
Q  108 agccg 112  Q
    |||||    
T  31303527 agccg 31303523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 13954916 - 13955078
Alignment:
Q  14 aaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgcagccgt 113  Q
    |||| ||||||||||||||||||| |||||||||||| ||  |||| ||||||| ||||||||| || |||||||||||||  |||||||||| ||||      
T  13954916 aaccccaaccaccacgatccttacaacgacaaacgattcgggagtttgttgaaggaggattaatcgtgaatgaaagagatgccgccacacctgtagccac 13955015  T
Q  114 cggaagtagatcacacatatcgatgccacacatcgcaccctccacatcacatgtccgttacca 176  Q
    |||||  |||| |||| ||||||  ||| ||||| | |||||||||  ||| |||||| ||||    
T  13955016 cggaaacagataacacctatcgaaaccatacatcaccccctccacacgacacgtccgtcacca 13955078  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 7392688 - 7392761
Alignment:
Q  20 aaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagat 93  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| | ||||||||| || |||||| |||||    
T  7392688 aaccaccacgatccttacgacgacaaacgatccgggagttcgttgagggaggattaatcgtgaatgaacgagat 7392761  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 12566718 - 12566633
Alignment:
Q  10 gaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgt 95  Q
    ||||||||| |||||||||||||| || |||||| |||||||||  ||  ||| |||| ||||||||| ||  | |||||||||||    
T  12566718 gaacaaccaaaaccaccacgatccatatgacgacgaacgatccgggagagcgtcgaaggaggattaatcgtggaggaaagagatgt 12566633  T

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Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 16146952 - 16146849
Alignment:
Q  8 acgaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgc 107  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||||||  |||||||||||| ||||||||| ||  |||||||| |||| | |||||||||    
T  16146952 acgaataacgacaaccaccacgatccttatgacgacaaacgatccgggagttcgttgaaggaggattaatcgtggatgaaagatatgtcg-cacacctgc 16146854  T
Q  108 agccg 112  Q
    |||||    
T  16146853 agccg 16146849  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 7857102 - 7857022
Alignment:
Q  14 aaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatg 94  Q
    |||| |||||| |||||||||||||||||||||||||||  ||||||||||||| |||||||||  | |||| ||||||||    
T  7857102 aacctcaaccatcacgatccttacgacgacaaacgatccagaagttcgttgaaggaggattaatcatgaatggaagagatg 7857022  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 52278004 - 52277913
Alignment:
Q  15 accacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgc 107  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||||||| | ||||||||| ||| || ||| | |||| |||||||||||    
T  52278004 accacaaccaccacgatccttacgacgacatacgatccagaagttcgttgatggaggattaatcgtagat-aaaaaaatgtcgccacacctgc 52277913  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 24658358 - 24658295
Alignment:
Q  14 aaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaat 77  Q
    ||||||||||||||||||||||||||| |||||| |||||  |||||||||||| |||||||||    
T  24658358 aaccacaaccaccacgatccttacgacaacaaacaatccgggagttcgttgaaggaggattaat 24658295  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 46815062 - 46815104
Alignment:
Q  11 aacaaccacaaccaccacgatccttacgacgacaaacgatccg 53  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  46815062 aacaaccacaaccaccacgatccttacgacaacaaacgatccg 46815104  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 34389472 - 34389405
Alignment:
Q  10 gaacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaat 77  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  34389472 gaacaaccacaaccatcacgatccttacgacgacaaacgatccggaagtttgttgaaggaggattaat 34389405  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 3477824 - 3477727
Alignment:
Q  15 accacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgcagccg 112  Q
    |||| |||||||||||||||||||| ||||||||| ||   |||||||||||| ||||||||| |||||||||| |||||| | ||||||||| ||||    
T  3477824 accataaccaccacgatccttacgatgacaaacgagccaggagttcgttgaaggaggattaatcgtaaatgaaaaagatgtcgtcacacctgctgccg 3477727  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 42533938 - 42534003
Alignment:
Q  12 acaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaat 77  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||  |||||||||    
T  42533938 acaaccacaaccaccacgatccttacgacgacaaacgattcggaagttcgttgaaagaggattaat 42534003  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 7191105 - 7191239
Alignment:
Q  11 aacaaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgcagc 110  Q
    |||||||||||||| || |||||||||||  ||||||||| |  || |||||||||| || |||| |  | |||||||||||||   |||||||||||||    
T  7191105 aacaaccacaaccatcatgatccttacgataacaaacgattcagaatttcgttgaaggagaattagtcatgaatgaaagagatgcccccacacctgcagc 7191204  T
Q  111 cgtcggaagtagatcacacatatcgatgccacaca 145  Q
     |||| ||   |||||||||||||| | |||||||    
T  7191205 tgtcgaaaacggatcacacatatcggtaccacaca 7191239  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 665
Target Start/End: Complemental strand, 3475902 - 3475841
Alignment:
Q  603 tgaagaaggtggtgcgcagacgaagtctcgtcgcaccaccgctgctatgatctacatcttgag 665  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||  |||| ||||||||||    
T  3475902 tgaagaaggtggtgcggagatgaagtatcgtcgcaccaccgctgctgggatc-acatcttgag 3475841  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 597 - 647
Target Start/End: Complemental strand, 1319535 - 1319485
Alignment:
Q  597 gggggttgaagaaggtggtgcgcagacgaagtctcgtcgcaccaccgctgc 647  Q
    |||||||| ||| ||||||||| ||| ||| ||||||||||||||||||||    
T  1319535 gggggttggagagggtggtgcggagatgaaatctcgtcgcaccaccgctgc 1319485  T

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Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 10249038 - 10249209
Alignment:
Q  14 aaccacaaccaccacgatccttacgacgacaaacgatccgaaagttcgttgaagaaggattaattgtaaatgaaagagatgttgccacacctgcagccgt 113  Q
    |||| |||||||||||||||||||||  |||||||||  |  |||||||||||| ||||||||| || |||||||||||||  |||||| ||| || | |    
T  10249038 aaccccaaccaccacgatccttacgatcacaaacgatttgggagttcgttgaaggaggattaatcgtgaatgaaagagatgccgccacaactgtagtcat 10249137  T
Q  114 cggaagtagatcacacatatcgatgccacacatcgcaccctccacatcacatgtccgttaccatcactgacc 185  Q
    |||||   || ||||| |||||   ||||||||| | ||||||||| |||| |||||| |||| ||| ||||    
T  10249138 cggaaacggaccacacctatcggcaccacacatcaccccctccacaccacacgtccgtcaccaccaccgacc 10249209  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 1578907 - 1578868
Alignment:
Q  20 aaccaccacgatccttacgacgacaaacgatccgaaagtt 59  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  1578907 aaccaccatgatccttacgacgacgaacgatccgaaagtt 1578868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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