View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3291_high_10 (Length: 345)
Name: NF3291_high_10
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 43912204 - 43912301
Alignment:
| Q |
179 |
ggggttgggattgagtttgtaacttgagacagcaatgttggtatatgtcatatgttttgcaatattttcccctcggttcataatttccttggatgaac |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43912204 |
ggggttgggattgagtttgtaacttgagacagcaatgttggtatatgtcatatgttttgcaatattttccctccggttcataatttccttggatgaac |
43912301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 43912028 - 43912147
Alignment:
| Q |
1 |
cagcttaatcgtggattattgaataatctaggccacaatttatgtatgtgacctttggttggtttgattcctgtcctcctaaagcaagagtagaagaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||||||| |||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43912028 |
cagcttaatcgtggattattgaataatccag-ctacaatttttgtacgtgacctt-gattggtttgattcctggcctcctaaagcaagagtagaagaagc |
43912125 |
T |
|
| Q |
101 |
ttctcacacacaaaggtaaagt |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
43912126 |
ttctcacacacaaaggtaaagt |
43912147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 3385064 - 3385031
Alignment:
| Q |
295 |
tcaatcactttttggtgtcatccaggtattcttg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3385064 |
tcaatcactttttggtgtcatccaggtattcttg |
3385031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University