View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3291_high_11 (Length: 344)
Name: NF3291_high_11
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 76 - 327
Target Start/End: Complemental strand, 36770647 - 36770397
Alignment:
| Q |
76 |
cgacaaccaagtggatccactaatatattatgcagaaaacataaatgtctgagccttagcactatacatttggtcttttgaccatataaaacttgctata |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36770647 |
cgacaaccaagtggatccactaatatattatgcagaaaacataaatgtctgagccttagcactatacatttggtcttgtgaccatataaaacttgctata |
36770548 |
T |
|
| Q |
176 |
acaagtcttgtatggtcacaagactaaacatattagtgtttaggcacacacaaatgtgtctctttatgtgtgcctaaacactatacgtttggtcttgtga |
275 |
Q |
| |
|
||||||||| |||||||||||||||||| || || |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
36770547 |
acaagtcttacatggtcacaagactaaacgta-tactgtttaggcacacagaaatgtgtctctttgtgtgtgcctaaacactataagtttggtcttgtga |
36770449 |
T |
|
| Q |
276 |
ccatataagaataactcaattcacacaatggtccatttcatctaactactcc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36770448 |
ccatataagaataactcaattcacacaatggtccatttcatctaactactcc |
36770397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 36770439 - 36770542
Alignment:
| Q |
181 |
tcttgtatggtcacaagactaaacatattagtgtttaggcacacacaaatgtgtctc-tttatgtgtgcctaaacactatacgtttggtcttgtgaccat |
279 |
Q |
| |
|
|||| |||||||||||||| |||| ||| |||||||||||||||||||| | | | | ||| |||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
36770439 |
tcttatatggtcacaagaccaaacttat-agtgtttaggcacacacaaa-gagacacatttctgtgtgcctaaacagtatacgtttagtcttgtgaccat |
36770536 |
T |
|
| Q |
280 |
ataaga |
285 |
Q |
| |
|
||||| |
|
|
| T |
36770537 |
gtaaga |
36770542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 26317827 - 26317782
Alignment:
| Q |
240 |
tatgtgtgcctaaacactatacgtttggtcttgtgaccatataaga |
285 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
26317827 |
tatgtgtgcctaaacactatacatttggtcttgtgaccatagaaga |
26317782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 30204223 - 30204267
Alignment:
| Q |
241 |
atgtgtgcctaaacactatacgtttggtcttgtgaccatataaga |
285 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||| |||| |
|
|
| T |
30204223 |
atgtgtgcctaaacactatacatatggtcttgtgaccatagaaga |
30204267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 52216133 - 52216187
Alignment:
| Q |
240 |
tatgtgtgcctaaacactatacgtttggtcttgtgaccatataagaataactcaa |
294 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||| |||| || ||||| |
|
|
| T |
52216133 |
tatgtgtgtctaaacactatatatttggtcttgtgaccatagaagactagctcaa |
52216187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 6823713 - 6823672
Alignment:
| Q |
244 |
tgtgcctaaacactatacgtttggtcttgtgaccatataaga |
285 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
6823713 |
tgtgtctaaacactatacatttggtcttgtgaccatagaaga |
6823672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 11659830 - 11659785
Alignment:
| Q |
240 |
tatgtgtgcctaaacactatacgtttggtcttgtgaccatataaga |
285 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||| |||| |
|
|
| T |
11659830 |
tatgtgtgcctaaacactatacatatggtcttgtgaccataaaaga |
11659785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 8010076 - 8010120
Alignment:
| Q |
240 |
tatgtgtgcctaaacactatacgtttggtcttgtgaccatataag |
284 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||||| ||||| |
|
|
| T |
8010076 |
tatgtgtgcctaaacactatgcatttagtcttgtgaccaaataag |
8010120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University