View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291_high_17 (Length: 254)
Name: NF3291_high_17
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 55577976 - 55577761
Alignment:
| Q |
19 |
atggatcacgatggtgatccaaaatcccaaccctttgctgaaagtcgtccatcctatccagtattttgtctgtcatagctgaggggtatttccaagatac |
118 |
Q |
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| T |
55577976 |
atggatcacgatggtgatccaaaatcccaaccctttgctgaaagtcgtccatcctatccagtattttgtctgtcatagctgaggggtatttccaagatac |
55577877 |
T |
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| Q |
119 |
agccataatggccctccaatcagagccaatagcattgtaaacctttttcatctcctctagggtgtaacaaagcacgatctgtcgaggccaatgatcggtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55577876 |
agccataatggccctccaatcagagccaatagcattgtaaacctttttcatctcctctagggtgtaacaaagcacgatctgtcgaggccaatgatcggtt |
55577777 |
T |
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| Q |
219 |
cttggatcttcaattt |
234 |
Q |
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|||||||||||||||| |
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| T |
55577776 |
cttggatcttcaattt |
55577761 |
T |
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