View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291_high_23 (Length: 212)
Name: NF3291_high_23
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291_high_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 2065424 - 2065224
Alignment:
| Q |
8 |
accaagaaagagatgcatactaatgtgaacagcnnnnnnnnnnnnngtgaacagtgtatctctctttcttaaacaaaaaacctgaacacatttacttctg |
107 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
2065424 |
accaagaaagagatgcatactaatgtgaacagcaaaaaaaaa----gtgaacagtgtatctctctttcttacacaaaaaacctgaacgcatttacttctg |
2065329 |
T |
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| Q |
108 |
tacattcaatcaaataaattccatttccccaactccatccattaacattcaattcatggacccaattcctcacatgccactcacgtgccctctccctctc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2065328 |
tacattcaatcaaataaattccatttccccaactccatccattaacattcaattcatgtacccaattcctcacatgccactcacgtgccctctccctctc |
2065229 |
T |
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| Q |
208 |
ctatc |
212 |
Q |
| |
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||||| |
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| T |
2065228 |
ctatc |
2065224 |
T |
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