View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291_high_6 (Length: 425)
Name: NF3291_high_6
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 4601398 - 4600986
Alignment:
| Q |
1 |
catgcagactagcggttgatggacagcatat----ccggtgtccgactcatatgattatactattctattggttgagattaaaacagattctactaaatc |
96 |
Q |
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| T |
4601398 |
catgcagactagcggttgatggacggcatatatatccggtgtccgactcatatgattatactattctattggttgagattaaaacagattctactaaatc |
4601299 |
T |
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| Q |
97 |
atgcaggccatgtaaatttaacgagaatcatatgaatttcaatgaataaaatagtttgttaatgacatatttggattgaatgtagctgcacatgttagtt |
196 |
Q |
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| T |
4601298 |
atgcaggccatgtaaatttaacgagaatcatatgaatttcaatgaataaaatagtttgttaatgacatatttggattgaatgtagctgcacatgttagtt |
4601199 |
T |
|
| Q |
197 |
tcttgctctacactgacacatgtgtgacaccaccaaatacacattaaacatgaagtgttggtgctcagtaactcacgtttctttagaggcacaaaaggtt |
296 |
Q |
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| T |
4601198 |
tcttgttctacactgacacatgtgtgacaccaccaaatacacattaaacatgaagtgttg-------gtaactcacgtttctttagaggcacaaaaggtt |
4601106 |
T |
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| Q |
297 |
aaaaatttagttttgacccttgtgggtttgataagcgtgctttgtttgcatatattgcatgttagtgttacaaaaagactaattatttgtcatttggtgg |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4601105 |
aaaaatttagttttgacccttgtgggtttgataagcgtgctttgtttgcatatattgcatgttagtgttacaaaaagactaattatttgtcatttggtgt |
4601006 |
T |
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| Q |
397 |
ggttggttgttaatgatgat |
416 |
Q |
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| T |
4601005 |
ggttggttgttaatgatgat |
4600986 |
T |
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