View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291_low_1 (Length: 884)
Name: NF3291_low_1
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 22 - 618
Target Start/End: Complemental strand, 43528716 - 43528117
Alignment:
| Q |
22 |
ataacattcttctgatcaatcaaaatcttcttcttcaagcttccgatcactctgaacattc--ctgcgcaaatcaatcatcacaattcgcaacacgcttc |
119 |
Q |
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| T |
43528716 |
ataacattcttctgatcaatcaaaatcttcttcttcaagcttccgatcactctgaacattcttctgcgcaaatcaatcatcacaattcgcaacacgcttc |
43528617 |
T |
|
| Q |
120 |
aattcatctcccttattatcatcaccactgttttctgcattcgattttcgttcttttaccgtttaattctctgaaatttgattaatcttttgtaggtgat |
219 |
Q |
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| T |
43528616 |
aattcatctcccttattatcatcaccactgttttctgcattcgattttcgttcttttaccgtttaattctctgaaatttgattaatcttttgtaggtgat |
43528517 |
T |
|
| Q |
220 |
ttctttgatcatcttcaacaatggattcaggtttgtggagttcttcttcaaagaccaaaatcagaacgcctttcccagaacgctttctccaccgaaagaa |
319 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43528516 |
ttctttgatcatcttcaacaatggattcgggttcgtggagttcttcttcaaagaccaaaatcagaacgcctttcccagaacgctttctccaccgaaataa |
43528417 |
T |
|
| Q |
320 |
ttcttctcaggataacgtaagcccctaatttctcatctgtagggttttcttaaatttaggctttctcattttattttatcgattcagatactctcaattt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43528416 |
ttcttctcaggataacgtaagcccctaatttctcatctgtagggctttcttaaatttaggctttctcattttattttatcgattcagatactctcaattt |
43528317 |
T |
|
| Q |
420 |
atg-nnnnnnnnnngtcaacaatttagggttttctctaatttctcaatttagggttttagtgtttcacaatttcttttccattcgatttttaccttatct |
518 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43528316 |
atgtttttttttttgtcaacaatttagggttttctctaatatctcaatttagggttttagtgtttcacaatttcttttccgttcgatttttaccttatct |
43528217 |
T |
|
| Q |
519 |
attcagaatttattactttagggttttcttgaaaacatttctcattttagggttttccctttgatttaattttaccgattcagaatttctcaattcagga |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43528216 |
attcagaatttattactttagggttttcttgaaaacatttctcattttagggttttccctttgatttaattttaccgattcagaatttctcaattcagga |
43528117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 727 - 877
Target Start/End: Complemental strand, 43528004 - 43527854
Alignment:
| Q |
727 |
tatggattcagaattgctcaattcagggttttgnnnnnnngaaacagttggataggttcataccaaaccgatcagcgatggattttgattacgctcacta |
826 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43528004 |
tatggattcagaattgctcaattcagggttttgtttttttgaaacagttggataggttcataccaaaccgatcagcgatggattttgattacgctcacta |
43527905 |
T |
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| Q |
827 |
catgatgatggagggttgtagaaaaggaaaagagaacccagtgatgatgtc |
877 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
43527904 |
catgatgatggagggttgtagaaaaggaaaagagaatccagcgttgatgtc |
43527854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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