View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3291_low_12 (Length: 338)

Name: NF3291_low_12
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3291_low_12
NF3291_low_12
[»] chr5 (1 HSPs)
chr5 (19-330)||(33559633-33559944)
[»] chr2 (27 HSPs)
chr2 (22-330)||(39391420-39391728)
chr2 (19-327)||(39161103-39161411)
chr2 (19-327)||(39207783-39208091)
chr2 (19-216)||(39199086-39199283)
chr2 (85-216)||(39602301-39602432)
chr2 (19-216)||(39220472-39220669)
chr2 (73-216)||(39381871-39382014)
chr2 (109-216)||(44896030-44896137)
chr2 (111-217)||(39398847-39398953)
chr2 (105-216)||(39369561-39369672)
chr2 (76-216)||(39450809-39450949)
chr2 (129-225)||(39467270-39467366)
chr2 (121-225)||(39479023-39479127)
chr2 (139-207)||(39495267-39495335)
chr2 (259-326)||(39199473-39199540)
chr2 (259-328)||(39382204-39382273)
chr2 (121-190)||(39427412-39427481)
chr2 (276-328)||(39129495-39129547)
chr2 (248-328)||(39450511-39450591)
chr2 (276-328)||(39458221-39458273)
chr2 (268-327)||(39136294-39136353)
chr2 (268-326)||(39602005-39602063)
chr2 (268-329)||(39474277-39474338)
chr2 (278-326)||(27154993-27155041)
chr2 (114-202)||(39129768-39129856)
chr2 (268-328)||(39214937-39214997)
chr2 (268-324)||(39422489-39422545)
[»] chr6 (1 HSPs)
chr6 (121-222)||(16112593-16112694)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 33559944 - 33559633
Alignment:
Q  19 aattccttcattagagcacagctattcttcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33559944 aattccttcattagagcacagctattcttcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatt 33559845  T
Q  119 tgttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctcttccgtcatttcaac 218  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33559844 tgttcatcgcatcaagatctttctctttgacctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctcttccgtcatttcaac 33559745  T
Q  219 ttttcccttcattacatcatgaatttcattaacacgacttacttgattgttcttatcttcaagctctttgcagcactcttcaatatctttctttacagac 318  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33559744 ttttcccttcattacatcatgaatttcattaaaacgacttacttgattgttcttatcttcaagctctttgcagcactcttcaatatctttctttacagac 33559645  T
Q  319 tgcaatctctct 330  Q
    ||||||||||||    
T  33559644 tgcaatctctct 33559633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 330
Target Start/End: Original strand, 39391420 - 39391728
Alignment:
Q  22 tccttcattagagcacagctattcttcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatttgt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||| || ||||||||||||| ||||||||    
T  39391420 tccttcattagagcacagctattcttcatttctgatattatatttatcgatttcttctttgtagactctaatttttctgcttcttcaccaattaatttgt 39391519  T
Q  122 tcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctcttccgtcatttcaacttt 221  Q
    |  | ||||||||||| ||||||||||||||||||||||||||||||||| |||  ||||||||||||||| | |||||||||||| ||| |||||||||    
T  39391520 ttgttgcatcaagatctttctctttggcctgaagttccacagtacattcaacaattttttgggaaagagccttcagttcctcttccttcacttcaacttt 39391619  T
Q  222 tcccttcattacatcatgaatttcattaacacgacttacttgattgttcttatcttcaagctctttgcagcactcttcaatatctttctttacagactgc 321  Q
    || || |||| | |||||||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||    
T  39391620 tctctgcatttcgtcatgaattttattaacacaactaacttgcttgttcttatcttcaagctctttgcagcactcttcaatatctttctttatggacagc 39391719  T
Q  322 aatctctct 330  Q
    |||||||||    
T  39391720 aatctctct 39391728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 39161411 - 39161103
Alignment:
Q  19 aattccttcattagagcacagctattcttcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || || |||||| |||  ||||||||| | || | |||||||| || |||||    
T  39161411 aattccttcattagagcacagctattcttcatttctgatattatatttattgacttcttccttgttgactctaatatttctgtttcttcactaattaatt 39161312  T
Q  119 tgttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctcttccgtcatttcaac 218  Q
    ||||||  ||||||||||| | |||||||| || |||| ||| ||||||||||| ||| ||| ||||||||| |||||||||||||||| ||||||||||    
T  39161311 tgttcactgcatcaagatcttcctctttggtcttaagtaccaaagtacattcagtaacttttagggaaagagtcctgagttcctcttccttcatttcaac 39161212  T
Q  219 ttttcccttcattacatcatgaatttcattaacacgacttacttgattgttcttatcttcaagctctttgcagcactcttcaatatctttctttacagac 318  Q
    ||||| || ||||   |  |||||||||||||||| ||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||  |  |||    
T  39161211 ttttcgctgcattttgttgtgaatttcattaacacaactaactagcttgttcttatcttcaagctctttgcagcattcttcaatatctttctggatggac 39161112  T
Q  319 tgcaatctc 327  Q
    |||||||||    
T  39161111 tgcaatctc 39161103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 39207783 - 39208091
Alignment:
Q  19 aattccttcattagagcacagctattcttcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || || |||||| |||  ||||||||| | || | |||||||| || |||||    
T  39207783 aattccttcattagagcacagctattcttcatttctgatattatatttattgacttcttccttgttgactctaatatttctgtttcttcactaattaatt 39207882  T
Q  119 tgttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctcttccgtcatttcaac 218  Q
    ||||||  ||||||||||| | |||||||| || |||| ||| ||||||||||| ||| ||| ||||||||| |||||||||||||||| ||||||||||    
T  39207883 tgttcactgcatcaagatcttcctctttggtcttaagtaccaaagtacattcagtaacttttagggaaagagtcctgagttcctcttccttcatttcaac 39207982  T
Q  219 ttttcccttcattacatcatgaatttcattaacacgacttacttgattgttcttatcttcaagctctttgcagcactcttcaatatctttctttacagac 318  Q
    ||||| || ||||   |  |||||||||||||||| ||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||  |  |||    
T  39207983 ttttcgctgcattttgttgtgaatttcattaacacaactaactagcttgttcttatcttcaagctctttgcagcattcttcaatatctttctggatggac 39208082  T
Q  319 tgcaatctc 327  Q
    |||||||||    
T  39208083 tgcaatctc 39208091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 39199086 - 39199283
Alignment:
Q  19 aattccttcattagagcacagctattcttcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatt 118  Q
    |||||||||| | |||||   |||||||||||||||||||||||||  | ||  |||||| || |||| ||||| || ||||| | |||||||| |||||    
T  39199086 aattccttcacttgagcaatactattcttcatttctgatattatatttagcgccttcttccttccagattctaacttttccgcctgttcaccaattaatt 39199185  T
Q  119 tgttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctcttccgtcatttca 216  Q
    ||||||  ||| |||| || |||| |||||||| |  ||||| |||| |||||||||  | ||||||||||||| |||||||||||||| || |||||    
T  39199186 tgttcactgcaccaagctctttctgtttggccttatattccaaagtaaattcagcaatttgttgggaaagagccttgagttcctcttccttcctttca 39199283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 39602432 - 39602301
Alignment:
Q  85 gactctaatttctccgcttcttcaccaactaatttgttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttggg 184  Q
    ||||||||||| || ||||   |||||| |||| ||||||| |||||||| ||  |||||||||||| |||||||| |||| |||||||||  |||||||    
T  39602432 gactctaatttttctgcttgcccaccaattaatctgttcattgcatcaagctctatctctttggccttaagttccaaagtaaattcagcaattttttggg 39602333  T
Q  185 aaagagccctgagttcctcttccgtcatttca 216  Q
    |||||||| |||||||||||||| || |||||    
T  39602332 aaagagccttgagttcctcttccttcctttca 39602301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 39220669 - 39220472
Alignment:
Q  19 aattccttcattagagcacagctattcttcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatt 118  Q
    |||||||||||  |||||   |||||||||||||||||||||||||   | |  |||||| || |||| ||||| || || |||| |||||||| |||||    
T  39220669 aattccttcatctgagcaatactattcttcatttctgatattatatttcttgccttcttcctttcagattctaacttttctgcttgttcaccaattaatt 39220570  T
Q  119 tgttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctcttccgtcatttca 216  Q
    ||||||  |||||||| || ||||||||||||| |   |||| || |  ||||||||  ||||||||||||||| ||| |||||||||| || |||||    
T  39220569 tgttcactgcatcaagctcgttctctttggccttacagtccaaagcaagttcagcaattttttgggaaagagccttgatttcctcttccttcctttca 39220472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 39381871 - 39382014
Alignment:
Q  73 ttcttctttgcagactctaatttctccgcttcttcaccaactaatttgttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcag 172  Q
    |||| |||| ||||||||||||| ||||||| |   |||| ||| |||||||| | |||||| ||  |||||||||||| |||||||| | || ||||||    
T  39381871 ttctccttttcagactctaatttttccgcttgtgtgccaattaacttgttcattgtatcaagctctatctctttggccttaagttccaaaataaattcag 39381970  T
Q  173 caaccttttgggaaagagccctgagttcctcttccgtcatttca 216  Q
    |||  | ||||||||||||| |||||||||||||| || |||||    
T  39381971 caatttgttgggaaagagccttgagttcctcttccttcctttca 39382014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 44896030 - 44896137
Alignment:
Q  109 ccaactaatttgttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctcttccg 208  Q
    |||||| |||| | ||| |||||||| || ||||||||||||| |||||||| |||||||||| |||  ||||||||||||||| |||||| |||||||     
T  44896030 ccaactgatttctccatagcatcaaggtctttctctttggccttaagttccatagtacattcatcaattttttgggaaagagccttgagttgctcttcct 44896129  T
Q  209 tcatttca 216  Q
    || |||||    
T  44896130 tcctttca 44896137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 39398847 - 39398953
Alignment:
Q  111 aactaatttgttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctcttccgtc 210  Q
    ||||||| | ||||| |||||||| || |||||||||| ||  ||||||| | ||||||| ||||| ||||||| ||||||| |||||||||||||| ||    
T  39398847 aactaatattttcattgcatcaagctctttctctttggactctagttccatattacattcggcaactttttgggcaagagccttgagttcctcttccttc 39398946  T
Q  211 atttcaa 217  Q
     ||||||    
T  39398947 ctttcaa 39398953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 39369672 - 39369561
Alignment:
Q  105 ttcaccaactaatttgttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctct 204  Q
    |||||||| ||| || ||||  |||||||| ||  |||||||||||  || ||||||||||  ||||||||  ||||||||||||||| |||||||||||    
T  39369672 ttcaccaattaagttattcactgcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttgagttcctct 39369573  T
Q  205 tccgtcatttca 216  Q
    ||| || |||||    
T  39369572 tccttcctttca 39369561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 216
Target Start/End: Complemental strand, 39450949 - 39450809
Alignment:
Q  76 ttctttgcagactctaatttctccgcttcttcaccaactaatttgttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaa 175  Q
    |||||| ||||||||||||| || |||| ||  |||| || ||||||||  |||||||| ||  |||||||||||| |  ||  | |||| ||||||||     
T  39450949 ttcttttcagactctaatttttcagcttgtttgccaattagtttgttcaatgcatcaagttctatctctttggccttacatttaaaagtaaattcagcat 39450850  T
Q  176 ccttttgggaaagagccctgagttcctcttccgtcatttca 216  Q
      ||||||||||||||| |||||||||||||| || |||||    
T  39450849 ttttttgggaaagagccttgagttcctcttccttcctttca 39450809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 39467366 - 39467270
Alignment:
Q  129 atcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctcttccgtcatttcaacttttccc 225  Q
    |||||| || |||||||||| || |||||||| | |||||| |||||| ||||| | ||||||| ||||| |||||||| |  ||||||||||||||    
T  39467366 atcaagctctttctctttggactcaagttccatattacatttagcaactttttgagtaagagccttgagtccctcttccttactttcaacttttccc 39467270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 225
Target Start/End: Original strand, 39479023 - 39479127
Alignment:
Q  121 ttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctcttccgtcatttcaactt 220  Q
    ||||| |||||||| || | ||| |||| || |||||||| | ||||||||| ||| || | || ||||||| |||||||||||||| || |||||||||    
T  39479023 ttcattgcatcaagctcttgctcgttggtcttaagttccagattacattcagaaactttctcggtaagagccttgagttcctcttccttcctttcaactt 39479122  T
Q  221 ttccc 225  Q
    |||||    
T  39479123 ttccc 39479127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 39495267 - 39495335
Alignment:
Q  139 ttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctcttcc 207  Q
    ||||||||||||| ||||||||||| ||||| |||||  ||||||||||||||  ||||||||| ||||    
T  39495267 ttctctttggccttaagttccacagaacattgagcaattttttgggaaagagctttgagttcctgttcc 39495335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 39199473 - 39199540
Alignment:
Q  259 acttgattgttcttatcttcaagctctttgcagcactcttcaatatctttctttacagactgcaatct 326  Q
    ||||| || ||||||| || |||||||||||||||||||||| ||||| ||||||  |||||||||||    
T  39199473 acttggttcttcttattttgaagctctttgcagcactcttcagtatctctctttatggactgcaatct 39199540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 39382204 - 39382273
Alignment:
Q  259 acttgattgttcttatcttcaagctctttgcagcactcttcaatatctttctttacagactgcaatctct 328  Q
    ||||| || ||||||| || |||||||||||||||||||||| ||||| ||||||  ||||| |||||||    
T  39382204 acttggttcttcttattttgaagctctttgcagcactcttcagtatctctctttatggactgtaatctct 39382273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 39427412 - 39427481
Alignment:
Q  121 ttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagag 190  Q
    |||||||||||| | || |||||||| | || |||||||||||||||||||||||  ||| |||||||||    
T  39427412 ttcatcgcatcacgctctttctctttagtcttaagttccacagtacattcagcaatttttcgggaaagag 39427481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 39129547 - 39129495
Alignment:
Q  276 ttcaagctctttgcagcactcttcaatatctttctttacagactgcaatctct 328  Q
    ||||||||||||| ||||||| ||||||||| ||||||  |||||||||||||    
T  39129547 ttcaagctctttggagcactcctcaatatctctctttatggactgcaatctct 39129495  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 328
Target Start/End: Complemental strand, 39450591 - 39450511
Alignment:
Q  248 taacacgacttacttgattgttcttatcttcaagctctttgcagcactcttcaatatctttctttacagactgcaatctct 328  Q
    |||||| ||| ||||| || ||||||| || ||||||||||||||| || ||||||||| |||| |  |||||||||||||    
T  39450591 taacacaactaacttgctttttcttattttgaagctctttgcagcagtcctcaatatctgtcttgatggactgcaatctct 39450511  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 39458273 - 39458221
Alignment:
Q  276 ttcaagctctttgcagcactcttcaatatctttctttacagactgcaatctct 328  Q
    |||||| |||||||||||||| ||||||||| ||||||  |||||||||||||    
T  39458273 ttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctct 39458221  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 39136353 - 39136294
Alignment:
Q  268 ttcttatcttcaagctctttgcagcactcttcaatatctttctttacagactgcaatctc 327  Q
    ||||||| |||||| |||| ||||||||| ||||||||| ||||||  ||||||||||||    
T  39136353 ttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctc 39136294  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 39602063 - 39602005
Alignment:
Q  268 ttcttatcttcaagctctttgcagcactcttcaatatctttctttacagactgcaatct 326  Q
    ||||||| |||||||||||||| |||||| | ||||||| ||||||  |||||||||||    
T  39602063 ttcttattttcaagctctttgcggcactcctgaatatctatctttatggactgcaatct 39602005  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 39474277 - 39474338
Alignment:
Q  268 ttcttatcttcaagctctttgcagcactcttcaatatctttctttacagactgcaatctctc 329  Q
    ||||||| ||||||||||| | ||||||| ||||||||| ||||||  || |||||||||||    
T  39474277 ttcttattttcaagctcttcggagcactcctcaatatctctctttatggaatgcaatctctc 39474338  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 27154993 - 27155041
Alignment:
Q  278 caagctctttgcagcactcttcaatatctttctttacagactgcaatct 326  Q
    ||||||||||| ||||||| ||||||||| ||||||  |||||||||||    
T  27154993 caagctctttggagcactcctcaatatctctctttatggactgcaatct 27155041  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 39129856 - 39129768
Alignment:
Q  114 taatttgttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcct 202  Q
    |||||| ||||| |||||| | || |||||||||  ||  |||||||||||||| | |||||  |||||||||||| || |||||||||    
T  39129856 taatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactgagcaatattttgggaaagatccttgagttcct 39129768  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 39214997 - 39214937
Alignment:
Q  268 ttcttatcttcaagctctttgcagcactcttcaatatctttctttacagactgcaatctct 328  Q
    ||||||| |||||||||||| |||||||| |||| || | ||||||  |||||||||||||    
T  39214997 ttcttattttcaagctctttacagcactcctcaacatatctctttatggactgcaatctct 39214937  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 39422489 - 39422545
Alignment:
Q  268 ttcttatcttcaagctctttgcagcactcttcaatatctttctttacagactgcaat 324  Q
    ||||||| ||| ||||||||||||||||  ||||||||| ||||||  |||||||||    
T  39422489 ttcttattttccagctctttgcagcacttctcaatatctctctttatggactgcaat 39422545  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 16112694 - 16112593
Alignment:
Q  121 ttcatcgcatcaagatccttctctttggcctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctcttccgtcatttcaactt 220  Q
    ||||| |||||||| || ||||| |||| || |||||||| | ||| ||| ||||| ||||||  ||||||| |||||||||||| | |  |||||||||    
T  16112694 ttcattgcatcaagctctttctccttggacttaagttccagattaccttccgcaactttttggttaagagccttgagttcctctttcttgctttcaactt 16112595  T
Q  221 tt 222  Q
    ||    
T  16112594 tt 16112593  T

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