View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291_low_20 (Length: 250)
Name: NF3291_low_20
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 36770982 - 36770748
Alignment:
| Q |
11 |
cacagaaactgtaatatcccacaaagccacctttaaataatcaccagaccacttaaaaaacaagttcaatgcaaacaatgttccttacgatgttatttat |
110 |
Q |
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| T |
36770982 |
cacagaaactgtaatatcccacaaagccacctttaaataatcaccagaccacttaaaaaacaagttcaatgcaaacaatgttccttacgatgttaattat |
36770883 |
T |
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| Q |
111 |
atgcagggtctgaaaataggtcccaccatttagtgtattgtatgcggcttagcttgnnnnnnnacataagagcctgttatcaaaacttgaactcgtggct |
210 |
Q |
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| T |
36770882 |
atgcagggtctgaaaataggtcccaccatttagtgtattgtatgcggcttaccttg-ttttttacataagaggctgttatcaaaacttgaactcgtggct |
36770784 |
T |
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| Q |
211 |
tacaatacatgtaaactacaatacaactataaaaaa |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
36770783 |
tacaatacatgtaaactacaatacaactataaaaaa |
36770748 |
T |
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