View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291_low_23 (Length: 242)
Name: NF3291_low_23
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 12271107 - 12271330
Alignment:
| Q |
1 |
caagaagttcaaaagtgttcgccctaatggggtggcaagaatcgccgtttcggatattctaaacggggatgaatcggaaaattgttcacgaattttgagt |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12271107 |
caagaagttcaaaagtgttcgccctattggggtggcaagaatcgccgtttcggatattctaaacggggatgaatcggaaaattgttcacgaattttgagt |
12271206 |
T |
|
| Q |
101 |
tataaattgagaaattgggaagggaggcaaaatggagttattcattttggtgtgagggtggttgtgccagagcaaagatcggttaccgtggcggagaagc |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12271207 |
tataaattgaggaattgggaagggaggcaaaatggagttattcattttggtgtgagggtggttgtgccagagcaaagaacggttaccgtggcggagaagc |
12271306 |
T |
|
| Q |
201 |
aaccggtggcggatggaaagagtt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
12271307 |
aaccggtggcggatggaaagagtt |
12271330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 12287773 - 12287996
Alignment:
| Q |
1 |
caagaagttcaaaagtgttcgccctaatggggtggcaagaatcgccgtttcggatattctaaacggggatgaatcggaaaattgttcacgaattttgagt |
100 |
Q |
| |
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||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12287773 |
caagaagtttaaaagtgttcgacctattggggtggcaagaatcgccgtttcggatattctaaacggggctgaatcggaaaattgttcacgaattttgagt |
12287872 |
T |
|
| Q |
101 |
tataaattgagaaattgggaagggaggcaaaatggagttattcattttggtgtgagggtggttgtgccagagcaaagatcggttaccgtggcggagaagc |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||| |||||||| ||| |
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| T |
12287873 |
tataaattgagagattgggaagggaggcaaaatggagttattcattttggtgtgaaggtggttgcgccagaggaaagatcggttacggtggcggaaaagg |
12287972 |
T |
|
| Q |
201 |
aaccggtggcggatggaaagagtt |
224 |
Q |
| |
|
|| | |||||||||| ||||||| |
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| T |
12287973 |
aaacactggcggatgggaagagtt |
12287996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12267197 - 12267417
Alignment:
| Q |
1 |
caagaagttcaaaagtgttcgccctaatggggtggcaagaatcgccgtttcggatattctaaacggggatgaatcggaaaattgttcacgaattttgagt |
100 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||| |||||||| | |||||||||| |||| || || | ||||||||||||| | |||||||||| |
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| T |
12267197 |
caagaagtttaaaagtgttcgtcctattggggtagcaagaattggcgtttcggattttcttaatggcaccgtgccggaaaattgttcgcaaattttgagt |
12267296 |
T |
|
| Q |
101 |
tataaattgagaaattgggaagggaggcaaaatggagttattcattttggtgtgagggtggttgtgccagagcaaagatcggttaccgtggcggagaagc |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
12267297 |
tataaattgagggattgggaagggaggcaaaatggggttattcattttagtgtgagggtggttgtgccggaggaaagatcggttaccgtggcggagaagc |
12267396 |
T |
|
| Q |
201 |
aaccggtggcggatggaaaga |
221 |
Q |
| |
|
|| ||||| | ||||||||| |
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| T |
12267397 |
aaacggtgatgcatggaaaga |
12267417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12282923 - 12283143
Alignment:
| Q |
1 |
caagaagttcaaaagtgttcgccctaatggggtggcaagaatcgccgtttcggatattctaaacggggatgaatcggaaaattgttcacgaattttgagt |
100 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||| |||||||| | |||||||||| |||| || || | | ||||||||||||| | |||||||||| |
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| T |
12282923 |
caagaagtttaaaagtgttcgtcctattggggtagcaagaattggcgtttcggattttctcaatggcgccgtgccggaaaattgttcgcaaattttgagt |
12283022 |
T |
|
| Q |
101 |
tataaattgagaaattgggaagggaggcaaaatggagttattcattttggtgtgagggtggttgtgccagagcaaagatcggttaccgtggcggagaagc |
200 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
12283023 |
tataaattgagggattgggaagggaggcaaaatggagttattcatttcagtgtgagggtggttgtgccggaggaaagatcagttaccgtggcggagaagc |
12283122 |
T |
|
| Q |
201 |
aaccggtggcggatggaaaga |
221 |
Q |
| |
|
|| ||||| | ||||||||| |
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| T |
12283123 |
aaacggtgatgcatggaaaga |
12283143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 12257103 - 12257296
Alignment:
| Q |
1 |
caagaagttcaaaagtgttcgccctaatggggtggcaagaatcgccgtttcggatattctaaacggggatgaatcggaaaattgttcacgaattttgagt |
100 |
Q |
| |
|
||||||||| |||||||| || |||| ||||||||||||||| || |||||||| |||| || || | |||||||||||| | |||||||||| |
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|
| T |
12257103 |
caagaagtttaaaagtgtacgtcctattggggtggcaagaattgctctttcggattttctcaatggcatcgcgccggaaaattgtttgcaaattttgagt |
12257202 |
T |
|
| Q |
101 |
tataaattgagaaattgggaagggaggcaaaatggagttattcattttggtgtgagggtggttgtgccagagcaaagatcggttaccgtggcgg |
194 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||| ||||||||||| |
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|
| T |
12257203 |
tataaattgaggaactgggaagggaggcaaaatggagttattcatttcagtgtgagggtggttgtgccggagaaaacatcggctaccgtggcgg |
12257296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 12264495 - 12264688
Alignment:
| Q |
1 |
caagaagttcaaaagtgttcgccctaatggggtggcaagaatcgccgtttcggatattctaaacggggatgaatcggaaaattgttcacgaattttgagt |
100 |
Q |
| |
|
||||||||| |||||||| || |||| ||||||||||||||| || |||||||| |||| || || | |||||||||||| | |||||||||| |
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|
| T |
12264495 |
caagaagtttaaaagtgtacgtcctattggggtggcaagaattgctctttcggattttctcaatggcatcgcgccggaaaattgtttgcaaattttgagt |
12264594 |
T |
|
| Q |
101 |
tataaattgagaaattgggaagggaggcaaaatggagttattcattttggtgtgagggtggttgtgccagagcaaagatcggttaccgtggcgg |
194 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||| ||||||||||| |
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| T |
12264595 |
tataaattgaggaactgggaagggaggcaaaatggagttattcatttcagtgtgagggtggttgtgccggagaaaacatcggctaccgtggcgg |
12264688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 29197829 - 29198019
Alignment:
| Q |
1 |
caagaagttcaaaagtgttcgccctaatggggtggcaagaatcgccgtttcggatattctaaacggggatgaatcggaaaattgttcacgaattttgagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || |||||||||||| ||||||||||||||||| ||||| |||||||||||| || ||||||||| |
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|
| T |
29197829 |
caagaagttcaaaagtgttcgccctattggggtgacacgaatcgccgttttggatattctaaacggggctgaattggaaaattgttcccggattttgagt |
29197928 |
T |
|
| Q |
101 |
tataaattgagaaattgggaagggaggcaaaatggagttattcattttggtgtgagggtggttgtgccagagcaaagatcggttaccgtgg |
191 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
29197929 |
tataaattgaggaactgggaagggaggcaaaatggagttattcattttggtgtgagggtggttatgccggagaaaagatcggttaccgtgg |
29198019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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