View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3291_low_27 (Length: 205)

Name: NF3291_low_27
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3291_low_27
NF3291_low_27
[»] chr6 (2 HSPs)
chr6 (74-205)||(24834297-24834428)
chr6 (11-88)||(24834464-24834541)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 24834428 - 24834297
Alignment:
Q  74 aactcaaatcacaactggttttataataattacatgcacacaattgttattacttgaatatgatgccaattttatcattttattcactatttgcagcaca 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24834428 aactcaaatcacaactggttttataataattacatgcacacaattgttattatttgaatatgatgccaattttatcattttattcactatttgcagcaca 24834329  T
Q  174 caatacaacacagatacacataagctgagacc 205  Q
    ||||||||||||||||||||||||||||||||    
T  24834328 caatacaacacagatacacataagctgagacc 24834297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 24834541 - 24834464
Alignment:
Q  11 cagagaaccacgaattaaaggaaacacactcatagaaccaccaactaaaggatttcagacatcaactcaaatcacaac 88  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24834541 cagagaaccacgaattaaaggaaacacactcgtagaaccaccaactaaaggatttcagacatcaactcaaatcacaac 24834464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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