View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3291_low_3 (Length: 620)
Name: NF3291_low_3
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 377 - 607
Target Start/End: Original strand, 39335185 - 39335415
Alignment:
| Q |
377 |
catatctttgattgtttttacgtgtcttccaagagtaatttgcaaagtttatataatgagaaatattgaaacaannnnnnnn-aatgttatcttaaacac |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39335185 |
catatctttgattgtttttacgtgtcttccaagagtaatttgaaaagtttatgtaatgagaaatattgaaacaaattttttttaatgttatcttaaacac |
39335284 |
T |
|
| Q |
476 |
tcattcttttatcaaattaaatcatcctaagtttcacaattttatgtgaaatttgtttttaaagtatgagatctatatttatttaactaggtnnnnnnng |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39335285 |
tcattcttttatcaaattaaatcatcctaagtttcacaattttatgtgaaatttatttttaaagtatgagatctatatttatttaactaggt-aaaaaag |
39335383 |
T |
|
| Q |
576 |
tgagtgttatagaatattaacaaggagaaagt |
607 |
Q |
| |
|
||| |||||||||||||||| ||||||||||| |
|
|
| T |
39335384 |
tgattgttatagaatattaaaaaggagaaagt |
39335415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 39334801 - 39335009
Alignment:
| Q |
1 |
aaatttcgtcaaaaataaaaatatttgcacgagggatgagactttacccaccaat--gccatcatcctataggctgtggccacctag----aagggatgg |
94 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||| |||||||| |||||||| |
|
|
| T |
39334801 |
aaatttcatcaaaaataaaaatatttgcatgagggatgagactttacccaccaatatgccaccatcctatagtctgtg-ccacctagctagaagggatga |
39334899 |
T |
|
| Q |
95 |
tacttagatcaatacaatagcacatggtattttctttgaaatttttaaaatttctaccaactacacacatttaaaaaacacatataaactgtaccaagat |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39334900 |
tacttagatcaatacaatagcacatggtattttctttgaaatttttaaaatttctaccaactacacacatttaaaaaacacatacaaactgtaccaagat |
39334999 |
T |
|
| Q |
195 |
gaacacatac |
204 |
Q |
| |
|
|||||||||| |
|
|
| T |
39335000 |
gaacacatac |
39335009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University