View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291_low_4 (Length: 543)
Name: NF3291_low_4
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 11 - 524
Target Start/End: Original strand, 37765370 - 37765892
Alignment:
| Q |
11 |
cacagagcaatgaaaattctaaacaagtttccatgaggattggaataatgattttatgatttaaggaaagaaataatacttggtacggataaccttgaca |
110 |
Q |
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| T |
37765370 |
cacagagcaattaaaattctaaacaagtttccatgaggattggaataatgattttatgatttaaggaaagaaataatacttggtacggataaccttgaca |
37765469 |
T |
|
| Q |
111 |
tcagttatttctcctttcttagaaaattcttttcttagtccatcctccctaacatgtttagggatattcttcacacatatcctcgacctgaaatcacaac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37765470 |
tcagttatttctcctttcttagaaaattcttttcttagtccatcctccctaacatgtttagggatattcttcacacatatcctcgacctgaaaacacaac |
37765569 |
T |
|
| Q |
211 |
cacagccaaatcatttcgcatattttggttttgactcggagtgttttcgttatattaagacagaatgtgacatttgcacttacatggcaccttaatagta |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37765570 |
cacaaccaaatcatttcgcatattttggttttgactcggagtgttttcgttatattaagacagaatgtgacatttgcacttacatggcaccttaatagta |
37765669 |
T |
|
| Q |
311 |
gacaatgctggcaatggaatcgtctgagacaaattaaacactcaattattatacaatgcatatctattataaagaattttcattggtgtaaat------- |
403 |
Q |
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| T |
37765670 |
gacaaagctggcaatggaatcgtctgagacaaattaaacactcaattattatacaatacatatttattataaagaattttcattgatataaatatccttt |
37765769 |
T |
|
| Q |
404 |
--tcgcgttaatcatatagctatagtgatatgtgttgattgaactatttccttttatttatcattaaaaagaacagcaccataatttaaaaatttatagc |
501 |
Q |
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| T |
37765770 |
tctaacattaatcatatagctatagtgatatgtgttgattgaactatttacttttatttatcattaaaaagaacagcaccataatttaaaaatttatagc |
37765869 |
T |
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| Q |
502 |
ataagcgcttattcatataagtg |
524 |
Q |
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| T |
37765870 |
ataagcgcttattcatataagtg |
37765892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 23 - 298
Target Start/End: Complemental strand, 38600825 - 38600551
Alignment:
| Q |
23 |
aaaattctaaacaagtttccatgaggattggaataatgattttatgatttaaggaaagaaataatacttggtacggataaccttgacatcagttatttct |
122 |
Q |
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|||||||||| |||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||||||| |||| ||||||||||||||||||| |
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| T |
38600825 |
aaaattctaagtaagtgtccatgaggattggaataaggatttta-gatttaaggaaagaaacaatacatggtacgcataagcttgacatcagttatttct |
38600727 |
T |
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| Q |
123 |
cctttcttagaaaattcttttcttagtccatcctccctaacatgtttagggatattcttcacacatatcctcgacctgaaatcacaaccacagccaaatc |
222 |
Q |
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| T |
38600726 |
cctatcttagaaaattttagtcttagatgatcctccgtataatatttagggatactcttcacacatattctcgacctggaaacacacccataaacaaatc |
38600627 |
T |
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| Q |
223 |
atttcgcatattttggttttgactcggagtgttttcgttatattaagacagaatgtgacatttgcacttacatggc |
298 |
Q |
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||| ||||||||| ||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38600626 |
gtttagcatattttagttctgaatcagagtgttttcgttatattaagacagaatgccacatttgcacttacatggc |
38600551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 37560380 - 37560185
Alignment:
| Q |
14 |
agagcaatgaaaattctaaacaagtttccatgaggattggaataatgattttatgatttaaggaaagaaataatacttggtacggataaccttgacatca |
113 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| |||||||||| |
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| T |
37560380 |
agagcagttaaaattctaaacaagtttccatgaggattggaataaggattttatgatttaaggaaagaaacaatacttggtacgcataagcttgacatca |
37560281 |
T |
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| Q |
114 |
gttatttctcctttcttagaaaattcttttcttagtccatcctccctaacatgtttagggatattcttcacacatatcctcgacctgaaatcacaa |
209 |
Q |
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|||||||||||||||| |||||||| | ||| |||| ||| ||| |||||| |||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
37560280 |
gttatttctcctttctgagaaaattgtgctctcagtcgatcttccgtaacatatttagggagattcttcacacatatcctcgacctggaaacacaa |
37560185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 37744203 - 37744389
Alignment:
| Q |
23 |
aaaattctaaacaagtttccatgaggattggaataatgattttatgatttaaggaaagaaataatacttggtacggataaccttgacatcagttatttct |
122 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||| |||||||||| || |||||||||| ||||||| ||||| |||| ||||||||||||||||||| |
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| T |
37744203 |
aaaattcaaaacaagtgtccatgaggattggaataaagattttatgactttaggaaagaaacaatactttgtacgcataagcttgacatcagttatttct |
37744302 |
T |
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| Q |
123 |
cctttcttagaaaattcttttcttagtccatcctccctaacatgtttagggatattcttcacacatatcctcgacctgaaatcacaa |
209 |
Q |
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|||||| |||||||||||| | |||||| |||||| ||||| |||||||| ||||||||| |||||||| |||||| || ||||| |
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| T |
37744303 |
cctttcctagaaaattcttgttttagtcgatcctctgcaacatatttagggagattcttcacgcatatcctggacctggaaacacaa |
37744389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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