View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291_low_7 (Length: 385)
Name: NF3291_low_7
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 367
Target Start/End: Complemental strand, 41038168 - 41037812
Alignment:
| Q |
11 |
cacagataagagcctcaggtccttgtcttgaaaggaatggctcggatgacaatctggtgatacacagcagcaagagcagctccaataaatggtccaaccc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41038168 |
cacagataagagcctcaggtccttgtcttgaaaggaatggctcggatgacaatctggtgatacacagcagcaagagcagctccaataaatggtccaaccc |
41038069 |
T |
|
| Q |
111 |
agaatatccactgcaaaatatcattaataatgcagcattatttaattaattacttaatctatagacaaaatttagagtctaaattttgttcataaaatta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41038068 |
agaatatccactgcaaaatatcattaataatgcagcattatttaattaattatttaatctatagacaaaatttagagtctaaattttgttcataaaatta |
41037969 |
T |
|
| Q |
211 |
aggtgatagaaaacatacatggtcatcccaagcaaagtccctgttaaagaggatggcagctccaagactcctagctgggttaatgcccgttcctgtgatt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037968 |
aggtgatagaaaacatacatggtcatcccaagcaaagtccctgttaaagataatggcagctccaagactcctagctgggttaatgcccgttcctgtgatt |
41037869 |
T |
|
| Q |
311 |
ggaattgtagccaagtggaccaagaacacagcaaacccaatgggaagaggagccaag |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037868 |
ggaattgtagccaagtggaccaagaacacagcaaacccaatgggaagaggagccaag |
41037812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 32570304 - 32570357
Alignment:
| Q |
11 |
cacagataagagcctcaggtccttgtcttgaaaggaatggctcggatgacaatc |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32570304 |
cacagataagagcctcaggtccttgtcttgaaaggaatggctcggatgacaatc |
32570357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 2649208 - 2649311
Alignment:
| Q |
263 |
atggcagctccaagactcctagctgggttaatgcccgttcctgtgattggaattgtagccaagtggaccaagaacacagcaaacccaatgggaagaggag |
362 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||| || || ||||||||||||||||| ||||| ||||||||||||||||| |||||||| | |
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| T |
2649208 |
atggcagcaccaagactcctagctgggttaatgccagttccagtaatgggaattgtagccaagtgaaccaaaaacacagcaaacccaattggaagaggtg |
2649307 |
T |
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| Q |
363 |
ccaa |
366 |
Q |
| |
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|||| |
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| T |
2649308 |
ccaa |
2649311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 2648979 - 2649071
Alignment:
| Q |
31 |
ccttgtcttgaaaggaatggctcggatgacaatctggtgatacacagcagcaagagcagctccaataaatggtccaacccagaatatccactg |
123 |
Q |
| |
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||||| |||||||||||| |||||||| || ||||||||||| | ||||||||| ||||||||||| || |||||||||||||| |||||||| |
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| T |
2648979 |
ccttgccttgaaaggaattgctcggatcactatctggtgatataaagcagcaagtgcagctccaatgaaaggtccaacccagaaaatccactg |
2649071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 351
Target Start/End: Original strand, 35229844 - 35229962
Alignment:
| Q |
233 |
tcatcccaagcaaagtccctgttaaagaggatggcagctccaagactcctagctgggttaatgcccgttcctgtgattggaattgtagccaagtggacca |
332 |
Q |
| |
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||||||||| ||| |||| |||| |||| || ||||| |||||||| | ||| |||||||| || ||||| || ||||| || || |||||||| |||| |
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| T |
35229844 |
tcatcccaaccaaggtccttgttgaagataatagcagcaccaagactacgagcagggttaataccagttccagtaattgggatagtggccaagtgaacca |
35229943 |
T |
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| Q |
333 |
agaacacagcaaacccaat |
351 |
Q |
| |
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|||||||||| |||||||| |
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| T |
35229944 |
agaacacagcgaacccaat |
35229962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 35229700 - 35229746
Alignment:
| Q |
80 |
gcaagagcagctccaataaatggtccaacccagaatatccactgcaa |
126 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||| |
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| T |
35229700 |
gcaagagctgctccaataaatggtcccacccagaagatccactgcaa |
35229746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 1615817 - 1615870
Alignment:
| Q |
11 |
cacagataagagcctcaggtccttgtcttgaaaggaatggctcggatgacaatc |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1615817 |
cacagataagagcctcaggtccttgtcttgaaaggaatggctcggatgacaatc |
1615870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 4481869 - 4481954
Alignment:
| Q |
266 |
gcagctccaagactcctagctgggttaatgcccgttcctgtgattggaattgtagccaagtggaccaagaacacagcaaacccaat |
351 |
Q |
| |
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||||| || ||||| |||||||||||||| || || ||||| ||||||||||||||||| || ||||| ||||||||||| ||||| |
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| T |
4481869 |
gcagcacctagacttctagctgggttaataccagtccctgtaattggaattgtagccaaatgcaccaaaaacacagcaaatccaat |
4481954 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 366
Target Start/End: Original strand, 40206882 - 40206971
Alignment:
| Q |
277 |
actcctagctgggttaatgcccgttcctgtgattggaattgtagccaagtggaccaagaacacagcaaacccaatgggaagaggagccaa |
366 |
Q |
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||||||||| |||||||||||||| || || | || || ||||||||||| |||| |||||||||||| ||||||||||| || ||||| |
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| T |
40206882 |
actcctagcggggttaatgcccgtaccggtaacggggatagtagccaagtgaaccatgaacacagcaaatccaatgggaagtggtgccaa |
40206971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 351
Target Start/End: Original strand, 31459491 - 31459622
Alignment:
| Q |
220 |
aaaacatacatggtcatcccaagcaaagtccctgttaaagaggatggcagctccaagactcctagctgggttaatgcccgttcctgtgattggaattgta |
319 |
Q |
| |
|
||||||||| || ||||||||| ||| ||| |||| |||| || ||||| |||||||||||||| ||||| || || ||||| |||||||| || || |
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| T |
31459491 |
aaaacatacgtgatcatcccaaccaaggtctttgttgaagataattgcagcaccaagactcctagcagggttgataccagttccagtgattgggatagtg |
31459590 |
T |
|
| Q |
320 |
gccaagtggaccaagaacacagcaaacccaat |
351 |
Q |
| |
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||||| || ||||| || ||||| |||||||| |
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| T |
31459591 |
gccaaatgcaccaaaaatacagcgaacccaat |
31459622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 31459299 - 31459392
Alignment:
| Q |
32 |
cttgtcttgaaaggaatggctcggatgacaatctg-gtgatacacagcagcaagagcagctccaataaatggtccaacccagaatatccactgca |
125 |
Q |
| |
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|||| ||||||||||||||||| ||| |||| ||| ||| || | ||| ||||| || || ||||| ||||||||||||||||| |||||||||| |
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| T |
31459299 |
cttgacttgaaaggaatggctctgatcacaa-ctgtgtggtaaagagctgcaagtgctgcaccaatgaatggtccaacccagaaaatccactgca |
31459392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 366
Target Start/End: Original strand, 40834888 - 40834988
Alignment:
| Q |
266 |
gcagctccaagactcctagctgggttaatgcccgttcctgtgattggaattgtagccaagtggaccaagaacacagcaaacccaatgggaagaggagcca |
365 |
Q |
| |
|
|||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||| | ||| |||| ||||| ||||||||||| ||||| || |||| |
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|
| T |
40834888 |
gcagctccaaagcttctagcagggttaataccagttccagtgataggaatagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgcca |
40834987 |
T |
|
| Q |
366 |
a |
366 |
Q |
| |
|
| |
|
|
| T |
40834988 |
a |
40834988 |
T |
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