View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3291_low_9 (Length: 367)
Name: NF3291_low_9
Description: NF3291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3291_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 68 - 349
Target Start/End: Original strand, 11928033 - 11928314
Alignment:
| Q |
68 |
tgtgaagaaacttgatcttcgtggtaatcatacacatttcttggtaggtgcaattgatttcacttcattgattgccttggaaaatatggaatatttggat |
167 |
Q |
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| T |
11928033 |
tgtgaagaaacttgatctttgtggtggtccgacacaatacttggtaggtgcaattgatttcacgtcgttgattgtcttggaaaatatggaatatttggat |
11928132 |
T |
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| Q |
168 |
cttagctctaannnnnnncctggcagccatatttcagaacaaataggctcacttgccaagttaaaatatctcaatttatcgtattctgtaattcctggga |
267 |
Q |
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| T |
11928133 |
cttagctctaatgtatttcctggcagacatatttcagaacacataggatcacataccaagttaaaatatctcaatttatcgttttctgtatttcccggga |
11928232 |
T |
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| Q |
268 |
aaattccttatcaaataggaaatcttttagagctagagtatttagatttaagtaaaagtttttatggtttgaatggagaaat |
349 |
Q |
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| T |
11928233 |
gaattccttatcaaataggaaatcttttatagctagagtatttagatttaagtaaaagtttttatggtttgaatggagaaat |
11928314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 11962240 - 11962546
Alignment:
| Q |
14 |
agatggagactgctgcaaatggaatggaattgagtgcaacaatgaaacaggtcatgtgaagaaacttgatcttcgtggtaatcatacacatttcttggta |
113 |
Q |
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| T |
11962240 |
agatggagactgctgcaaatggaaaggaattgagtgcaagaaagaaacaggccatgtgaagaaacttgatcttcgtggtgatgattcacaattcttggta |
11962339 |
T |
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| Q |
114 |
ggtgcaattgatttcacttcattgattgccttggaaaatatggaatatttggatcttagctctaannnnnnncctggcagccatatttcagaacaaatag |
213 |
Q |
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| T |
11962340 |
ggtgcaattgatttcacttcgttgattgtcttgcaaaatatggaatatttggatcttagctctaacgattttcctggcagccatatttcagaacaaatag |
11962439 |
T |
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| Q |
214 |
gctcacttgccaagttaaaatatctcaatttatcgtattctgtaattcctgggaaaattccttatcaaataggaaatcttttagagctagagtatttaga |
313 |
Q |
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| T |
11962440 |
gctcacttaccaagttaaagtatctcaatctctcagaatctttacctcgtgggaggattccttatcaaattggaaaacttttagagcttgaatatctaga |
11962539 |
T |
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| Q |
314 |
tttaagt |
320 |
Q |
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| T |
11962540 |
tctaagt |
11962546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 351
Target Start/End: Complemental strand, 11853311 - 11852974
Alignment:
| Q |
14 |
agatggagactgctgcaaatggaatggaattgagtgcaacaatgaaacaggtcatgtgaagaaacttgatcttcgtggtaatcatacacatttcttggta |
113 |
Q |
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| T |
11853311 |
agatggagactgctgcaaatggaaaggaattgagtgcaagaaagaaacaggccatgtgaagaaacttgatcttcgtggtgatgattcgcaattcttggca |
11853212 |
T |
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| Q |
114 |
ggtgcaattgatttcacttcattgattgccttggaaaatatggaatatttggatcttagctctaannnnnnncctggcagccatatttcagaacaaatag |
213 |
Q |
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||| ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||| | |||| | | ||||||||||||||| |
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| T |
11853211 |
ggttcaattgatttcacttggttgattgtcttgcaaaatatggaatatttggatcttagctataatttatttcaaggcaatcttttttcagaacaaatag |
11853112 |
T |
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| Q |
214 |
gctcacttgccaagttaaaatatctcaatttatcgtattctgtaattcctgggaaaattccttatcaaataggaaatcttttagagctagagtatttaga |
313 |
Q |
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| T |
11853111 |
gctcacttaccaagttaaagtatctcaatttctcaaattcttttgttggtgggaggattccttatcaaattggaaaacttttagatcttgaatatctaga |
11853012 |
T |
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| Q |
314 |
tttaagtaaaagtttttatggtttgaatggagaaatcc |
351 |
Q |
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| T |
11853011 |
tctaagtgagatgttttatggtataaacggagaaatcc |
11852974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 11833984 - 11833760
Alignment:
| Q |
14 |
agatggagactgctgcaaatggaatggaattgagtgcaacaatgaaacaggtcatgtgaagaaacttgatcttcgtggtaatcatacacatttcttggta |
113 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || |||| ||||||||| |
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| T |
11833984 |
agatggagactgctgcaaatggaaaggaattgagtgcaacaatgaaacaggtcatgtaaagaaacttgatcttcgtggtgatgattcacaattcttggta |
11833885 |
T |
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| Q |
114 |
ggtgcaattgatttcacttcattgattgccttggaaaatatggaatatttggatcttagctctaannnnnnncctggcagccatatttcagaacaaatag |
213 |
Q |
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||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||| | |||| ||||||||||||||||| |
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| T |
11833884 |
ggttcaattgatttcacttcgttgattgtcttgcaaaatatggaatatttggatcttagccataatttatttcaaggcaattctatttcagaacaaatag |
11833785 |
T |
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| Q |
214 |
gctcacttgccaagttaaaatatct |
238 |
Q |
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|||||||| |||||||||| ||||| |
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| T |
11833784 |
gctcacttaccaagttaaagtatct |
11833760 |
T |
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