View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3292_low_1 (Length: 886)
Name: NF3292_low_1
Description: NF3292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3292_low_1 |
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| [»] scaffold0325 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 715; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 1 - 868
Target Start/End: Original strand, 47137120 - 47137992
Alignment:
| Q |
1 |
attacccggcattaaagatgatgggaggtagaagatatatnnnnnnnngatcttcactaaaaactagtagatgcgagcttttaccaccacttatccacaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47137120 |
attacccggcattaaagatgatgggaggtagaagatatataaaaaaaagatcttcactaaaaactagtagatgcgagcttttaccaccacttatccacaa |
47137219 |
T |
|
| Q |
101 |
aataaccacaccggtgcatagaccctgatcaaagcaatccacatgaaatttagtcaccaccataccactcacacttcacaccaatgtttttaaaaaccga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47137220 |
aataaccacaccggtgcatagaccctgatcaaagcaatccacatgaaatttagtcaccaccataccactcacacttcacaccaatgtttttaaaaaccga |
47137319 |
T |
|
| Q |
201 |
acttaccagacgattcaaccggttgaaccgtgaattggcaccatttatgattcagatattttagtggctcaactataattttgcctatgaaacacgaact |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47137320 |
acttaccagacgattcaaccggttgaaccgtgaattggcaccatttatgattcagatattttagtggctcaactataattttccctatgaaacacgaact |
47137419 |
T |
|
| Q |
301 |
ctgacacaaacatctgacatgccgacactgctaattttaaaaatataggacacccacaacgatacatatatatttat--------ttattaaattatctn |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
47137420 |
ctgacacaaacatctgacatgccgacactgctaattttaaaaatataggacacccacaacggtacatatatatttatatatttatttattaaattatcta |
47137519 |
T |
|
| Q |
393 |
nnnnnnnnttaaatggagcaaatatatatcaaaaaatctaagttgagcatttaggatcaccacaaaaaagttcttatacaaaatgttataattttcacct |
492 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47137520 |
aaaaaaa-ttaaatggagcaaatatatatccaaaaatctaagttgagcatttaggatcaccacaaaaaagttcttatacaaaatgttataattttcacct |
47137618 |
T |
|
| Q |
493 |
tattcatccatatactatatcgaaaagataaagataacaatatcttcaagcctttcgtagatcacccctactttgacacatctttaacccccatagacgt |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | |
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|
| T |
47137619 |
tattcatccatatactatatcgaaaagataaagataataatatcttcaagcccttcgtagatcatccctactttgacacatctttaacccccatagaaga |
47137718 |
T |
|
| Q |
593 |
gtgtgtctaatgagcgttaaattgtgtcaaaacaaagacaaaaagnnnnnnngggacacttatcatacatgtatggacaccacgcttaatattagaggtg |
692 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47137719 |
gtgtgtctaatgagtgttaaattgtgtcaaaacaaagacaaaaagtttttctgggacacttatcatacatgtatggacaccacgcttaatattagaggtg |
47137818 |
T |
|
| Q |
693 |
tttgtacttccgagattttcgccctaattcgaatgatttaaatcacttgaactatgattgtgaggtctcgctctcgtttgatttttaagacattagttta |
792 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47137819 |
tttgtacttccgagattttcgccctagttcgaatgatttaaatcacttgaactatgattgtgaggtctcgctctcgtttgatttttaaaacattagttta |
47137918 |
T |
|
| Q |
793 |
cagaatagaaatgaatggcaaaataagtaagacttactaacaaaagggcagtgatagactcattcacccatcgatt |
868 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47137919 |
cagaatagaaatgaatggc--aataagtaagacttactaacaaaagggcagtgatagactcattcacccatcgatt |
47137992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 314 - 376
Target Start/End: Complemental strand, 28026868 - 28026806
Alignment:
| Q |
314 |
ctgacatgccgacactgctaattttaaaaatataggacacccacaacgatacatatatattta |
376 |
Q |
| |
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|||||| | |||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |
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| T |
28026868 |
ctgacaagtcgacactgctaattttaagaatataggacaccgacaccgatacatatatattta |
28026806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 32883875 - 32883816
Alignment:
| Q |
323 |
cgacactgctaattttaaaaatataggacacccacaacgatacatatatatttatttatt |
382 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || | ||||||||||||||||||||| |
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| T |
32883875 |
cgacactgctgattttaaaaatataggacaccggcaccaatacatatatatttatttatt |
32883816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 323 - 353
Target Start/End: Complemental strand, 39848887 - 39848857
Alignment:
| Q |
323 |
cgacactgctaattttaaaaatataggacac |
353 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
39848887 |
cgacactgctaattttaaaaatataggacac |
39848857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 316 - 370
Target Start/End: Complemental strand, 17956080 - 17956026
Alignment:
| Q |
316 |
gacatgccgacactgctaattttaaaaatataggacacccacaacgatacatata |
370 |
Q |
| |
|
|||||| || |||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
17956080 |
gacatgtcggcactactaattttaaaaatataggacacccacactgatacatata |
17956026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0325 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0325
Description:
Target: scaffold0325; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 322 - 382
Target Start/End: Original strand, 12793 - 12853
Alignment:
| Q |
322 |
ccgacactgctaattttaaaaatataggacacccacaacgatacatatatatttatttatt |
382 |
Q |
| |
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|||||||||||||| | ||||||| |||||||| ||| || |||||||||||| ||||||| |
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| T |
12793 |
ccgacactgctaatgtaaaaaatacaggacaccgacaccgctacatatatattaatttatt |
12853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 40939981 - 40940036
Alignment:
| Q |
327 |
actgctaattttaaaaatataggacacccacaacgatacatatatatttatttatt |
382 |
Q |
| |
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|||| |||||||||||||||||||||| ||| ||||||||| ||| ||||||||| |
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| T |
40939981 |
actgttaattttaaaaatataggacactaacaccgatacatacatagttatttatt |
40940036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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