View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3292_low_2 (Length: 432)
Name: NF3292_low_2
Description: NF3292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3292_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 4743535 - 4743931
Alignment:
| Q |
18 |
tggaacgatattttaccactttgatagaactgtgcgcttacggatttcgctatcatggtggtcaaaattttcccaataaccatggttgttacttgccacg |
117 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4743535 |
tggaacgatattttactacttcgatagaaccgtgcgcttacgaatttcgctatcatggtggtcaaaattttcccaataaccatggttgttacttgccacg |
4743634 |
T |
|
| Q |
118 |
aggaggaaagaagtcaaagagaaaaatagagtaaacacctctcaatcccaaagaggctctcttgagggagtcttccctcttccaccgttgtaggatccca |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4743635 |
aggaggaaagaagtcaa-gagaaaaatagagtaaacacctctcaatcccaaagaggctctcttgagggagtcttccctcttccaccgttgtaggatccca |
4743733 |
T |
|
| Q |
218 |
tagctagtgccactatttgctggctccaaattcatgtctatatttacttgagaattattacaagaattcaacatctctatttggtaatatatgacactct |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4743734 |
tagctagtgccactatttgctggctccaaattcatgtctatatttacttgagaattattacaagaattcaacatctctatttggtaacatatgacactct |
4743833 |
T |
|
| Q |
318 |
tttgaattctcctgtttgatattttatactataataatgaattgattgcaaaaatgtaattcaatgatttcctttgatatgatttgtgaataatatac |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4743834 |
tttgaattctcctgtttgatattttatactataataatgaattgattgcaaaaatgtaattcaatgatttcctttgatatgatttgtgaataatatac |
4743931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 75 - 336
Target Start/End: Original strand, 3675960 - 3676232
Alignment:
| Q |
75 |
gtggtcaaaattttcccaataaccatggttgttacttgccacgaggaggaaagaagtcaaagagaaaaatagagtaaacacctctcaatcccaaagaggc |
174 |
Q |
| |
|
||||||||| ||||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3675960 |
gtggtcaaagttttccccataaccatgtttgttacttgccatgaggaggaaggaagtcaaagagaaaaatagagtaa-cacctctcaatcccaaagaggc |
3676058 |
T |
|
| Q |
175 |
tctcttgagggagtcttccctcttccaccgttgtaggatcccatagctagtgccactatttgctggctccaaattcatgtctatatttacttgaga---- |
270 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||||| ||| | |||| ||||||||| |||||||| | || |
|
|
| T |
3676059 |
tctcttgagggagtcctccctcttccacctttgtaggatgccgtagctagtgccactagatgccgactccggattcatgtcaatatttacctctgaatta |
3676158 |
T |
|
| Q |
271 |
--------attattacaagaattcaacatctctatttggtaatatatgacactcttttgaattctcctgtttga |
336 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3676159 |
ttattattattattataagaattcaacatctctatttggtaatatatgacactcttttgaattctcctgtttga |
3676232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 122 - 305
Target Start/End: Original strand, 4750400 - 4750574
Alignment:
| Q |
122 |
ggaaagaagtcaaagagaaaaatagagtaaacacctctcaatcccaaagaggctctcttgagggagtcttccctcttccaccgttgtaggatcccatagc |
221 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| |||||||||| |||| |
|
|
| T |
4750400 |
ggaaggaagtcaaagagaaaaatagagtaa-cacctctcaattccaaagaggctctcttgagggagtcttctttctt--------gtaggatcccgtagc |
4750490 |
T |
|
| Q |
222 |
tagtgccactatttgctggctccaaattcatgtctatatttacttgagaattattacaagaattcaacatctctatttggtaat |
305 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4750491 |
tagtgccactagttatcagctccaaattcatgtctatatttacctgagaattattacaagaattcaacatctctatttggtaat |
4750574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 11376894 - 11376841
Alignment:
| Q |
17 |
gtggaacgatattttaccactttgatagaactgtgcgcttacggatttcgctat |
70 |
Q |
| |
|
||||||||||||||||| |||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
11376894 |
gtggaacgatattttactacttcgatagaaccgtgcgcttgcggatttcgctat |
11376841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 24493692 - 24493742
Alignment:
| Q |
14 |
cctgtggaacgatattttaccactttgatagaactgtgcgcttacggattt |
64 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| |||||||| ||||||| |
|
|
| T |
24493692 |
cctgtggaacgatattttactacttcgatagaaccgtgcgcttgcggattt |
24493742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 29367768 - 29367822
Alignment:
| Q |
16 |
tgtggaacgatattttaccactttgatagaactgtgcgcttacggatttcgctat |
70 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| || ||||| ||||||||||||| |
|
|
| T |
29367768 |
tgtggaacgatattttactgcttcgatagaaccgtacgcttgcggatttcgctat |
29367822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 18750441 - 18750489
Alignment:
| Q |
17 |
gtggaacgatattttaccactttgatagaactgtgcgcttacggatttc |
65 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
18750441 |
gtggaacgatattttactactttgatagaatcatgcgcttgcggatttc |
18750489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 18571726 - 18571693
Alignment:
| Q |
14 |
cctgtggaacgatattttaccactttgatagaac |
47 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
18571726 |
cctgtggaacgatattttactactttgatagaac |
18571693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University