View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3292_low_3 (Length: 284)

Name: NF3292_low_3
Description: NF3292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3292_low_3
NF3292_low_3
[»] chr4 (12 HSPs)
chr4 (56-144)||(23283761-23283851)
chr4 (75-146)||(55527920-55527991)
chr4 (1-42)||(12586760-12586801)
chr4 (1-41)||(55527875-55527915)
chr4 (75-146)||(12586805-12586875)
chr4 (1-42)||(24974108-24974149)
chr4 (75-143)||(24974153-24974221)
chr4 (75-146)||(33164512-33164583)
chr4 (76-143)||(36501873-36501940)
chr4 (101-143)||(40312827-40312869)
chr4 (101-143)||(40322903-40322945)
chr4 (9-42)||(45237486-45237519)
[»] chr5 (10 HSPs)
chr5 (75-146)||(759160-759231)
chr5 (90-146)||(34016002-34016058)
chr5 (91-146)||(34017642-34017697)
chr5 (75-140)||(6706042-6706107)
chr5 (98-146)||(17636344-17636392)
chr5 (99-146)||(6158973-6159020)
chr5 (75-142)||(30491802-30491869)
chr5 (1-42)||(5506653-5506694)
chr5 (75-147)||(11135740-11135812)
chr5 (91-147)||(28677885-28677941)
[»] chr6 (7 HSPs)
chr6 (75-150)||(17436548-17436623)
chr6 (98-145)||(4321768-4321815)
chr6 (75-146)||(35060902-35060973)
chr6 (75-147)||(14153353-14153425)
chr6 (90-146)||(31522557-31522613)
chr6 (75-146)||(32274184-32274255)
chr6 (97-146)||(24326944-24326993)
[»] chr2 (6 HSPs)
chr2 (75-146)||(8273245-8273316)
chr2 (101-150)||(12967266-12967315)
chr2 (75-147)||(22496083-22496155)
chr2 (99-148)||(31133177-31133226)
chr2 (101-149)||(20685003-20685051)
chr2 (90-146)||(25389872-25389928)
[»] chr3 (15 HSPs)
chr3 (75-148)||(15040679-15040752)
chr3 (75-156)||(42381605-42381686)
chr3 (75-147)||(42947374-42947446)
chr3 (75-146)||(39645774-39645845)
chr3 (76-146)||(35069454-35069524)
chr3 (1-42)||(7665808-7665849)
chr3 (75-140)||(34082845-34082910)
chr3 (75-147)||(53814568-53814640)
chr3 (75-140)||(7665739-7665804)
chr3 (75-142)||(39649889-39649956)
chr3 (91-146)||(54525802-54525857)
chr3 (112-146)||(19872185-19872219)
chr3 (96-146)||(39685212-39685262)
chr3 (1-42)||(19872103-19872144)
chr3 (75-147)||(50663874-50663946)
[»] chr1 (13 HSPs)
chr1 (90-147)||(33617643-33617700)
chr1 (1-42)||(33401483-33401524)
chr1 (1-42)||(33617719-33617760)
chr1 (75-147)||(33401407-33401479)
chr1 (75-146)||(28446537-28446608)
chr1 (90-147)||(28476004-28476061)
chr1 (75-147)||(28474791-28474863)
chr1 (90-146)||(50065478-50065534)
chr1 (75-146)||(3792560-3792631)
chr1 (75-146)||(39650196-39650267)
chr1 (1-34)||(33617911-33617944)
chr1 (1-42)||(48027058-48027099)
chr1 (90-146)||(5602944-5603000)
[»] chr8 (5 HSPs)
chr8 (75-147)||(5967244-5967316)
chr8 (4-42)||(5967202-5967240)
chr8 (1-42)||(34279523-34279564)
chr8 (90-146)||(34279583-34279639)
chr8 (98-146)||(43641003-43641051)
[»] chr7 (11 HSPs)
chr7 (75-143)||(5179-5247)
chr7 (75-146)||(5061735-5061806)
chr7 (1-42)||(38386249-38386290)
chr7 (91-146)||(19365418-19365473)
chr7 (1-42)||(5134-5175)
chr7 (1-42)||(38047721-38047762)
chr7 (82-146)||(42548773-42548837)
chr7 (75-146)||(26009369-26009440)
chr7 (75-142)||(38386178-38386245)
chr7 (91-152)||(28138753-28138814)
chr7 (97-146)||(33839471-33839520)
[»] scaffold0246 (1 HSPs)
scaffold0246 (96-152)||(2881-2937)


Alignment Details
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 23283761 - 23283851
Alignment:
Q  56 gtaatttgcactagcacta--taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaat 144  Q
    |||||||||||||||||    |||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| || |||||    
T  23283761 gtaatttgcactagcacatgttaacatgcataagagcatttcgatcatttactttgaaaatgagcgaattcatttaggtaataagtagaat 23283851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 55527920 - 55527991
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||| |  |||||||||||||| ||||| |||||||||||| ||||||  |||||||||||||||    
T  55527920 taacatgcgtaggggcatttcggtcatttgctttggaaatgagcgaatccatttaaataatgagcagaattc 55527991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12586760 - 12586801
Alignment:
Q  1 acgctacttatcttaagttgcgttataatttgcactagcgca 42  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  12586760 acgctacttatcttaagttacgttataatttgcactagcgca 12586801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 55527875 - 55527915
Alignment:
Q  1 acgctacttatcttaagttgcgttataatttgcactagcgc 41  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  55527875 acgctacttatcttaagttacgttataatttgcactagcgc 55527915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 12586805 - 12586875
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||| | |||||||||||||||| |||| |||||||||||| |||||  ||||||||| ||||||    
T  12586805 taacatgcgtagggacatttcggtcattta-tttggaaatgagcgaatccatttgagtaatgagctgaattc 12586875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24974108 - 24974149
Alignment:
Q  1 acgctacttatcttaagttgcgttataatttgcactagcgca 42  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  24974108 acgctacttatcttaagttacattataatttgcactagcgca 24974149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 24974153 - 24974221
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaa 143  Q
    ||||||||||| |  ||||||||||||||||||||  ||||||| ||| ||||| | ||||||||||||    
T  24974153 taacatgcgtaggggcatttcggtcatttactttgggaatgagcaaatccatttggataatgagcagaa 24974221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 33164512 - 33164583
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||| |  ||||| || |||||||||||| |||||||| |  ||||| |||||||||||||||||    
T  33164512 taacatgcgtaggggcattttggacatttactttgagaatgagcggaaccatttgggtaatgagcagaattc 33164583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 36501873 - 36501940
Alignment:
Q  76 aacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaa 143  Q
    |||||||||| |  ||||||| ||||||||||||  ||||||||||| ||| | ||||||||||||||    
T  36501873 aacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatctgggtaatgagcagaa 36501940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 40312827 - 40312869
Alignment:
Q  101 tttactttgaaaatgagcgaattcatttaggtaatgagcagaa 143  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||    
T  40312827 tttactttggaaatgagcgaaatcatttgggtaatgagcagaa 40312869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 40322903 - 40322945
Alignment:
Q  101 tttactttgaaaatgagcgaattcatttaggtaatgagcagaa 143  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||    
T  40322903 tttactttggaaatgagcgaaatcatttgggtaatgagcagaa 40322945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 45237519 - 45237486
Alignment:
Q  9 tatcttaagttgcgttataatttgcactagcgca 42  Q
    ||||||||||| ||||||||||||||||||||||    
T  45237519 tatcttaagttacgttataatttgcactagcgca 45237486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 759231 - 759160
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||| || ||||||||||||||||||||  ||||| ||||| |||||||||||||||||||||||    
T  759231 taacatgcgtatgagcatttcggtcatttactttgggaatgatcgaatccatttaggtaatgagcagaattc 759160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 34016058 - 34016002
Alignment:
Q  90 catttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    |||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||    
T  34016058 catttcagtcatttactttgggaatgagcgaatccatttaggtaatgagcagaattc 34016002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 34017642 - 34017697
Alignment:
Q  91 atttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||||||||||||||||||||| |  |||||  ||||||||||||||||    
T  34017642 atttcggtcatttactttgaaaatgagcggaaccatttgagtaatgagcagaattc 34017697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 6706042 - 6706107
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagca 140  Q
    ||||||||||| |  |||||| ||||||||||||| |||||||||||| ||||| | |||||||||    
T  6706042 taacatgcgtaggggcatttcagtcatttactttggaaatgagcgaatccatttggataatgagca 6706107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 17636392 - 17636344
Alignment:
Q  98 tcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||| ||||  ||||||||||| |||||||||||||||||||||||    
T  17636392 tcatttattttgggaatgagcgaatccatttaggtaatgagcagaattc 17636344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 6158973 - 6159020
Alignment:
Q  99 catttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    |||||||||||  ||||||||||| |||||| ||||||||||||||||    
T  6158973 catttactttgggaatgagcgaatccatttaagtaatgagcagaattc 6159020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 30491802 - 30491869
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcaga 142  Q
    ||||||||||| | ||||||  | | |||||||||  ||||||||||||||||| |||||||||||||    
T  30491802 taacatgcgtagggacattttcgacttttactttgggaatgagcgaattcatttgggtaatgagcaga 30491869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5506653 - 5506694
Alignment:
Q  1 acgctacttatcttaagttgcgttataatttgcactagcgca 42  Q
    |||||||||||||||||||  ||||||||||||||| |||||    
T  5506653 acgctacttatcttaagttatgttataatttgcactggcgca 5506694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 11135812 - 11135740
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattct 147  Q
    ||||||||||| |   |||| ||||||||| |||| ||||||||||| |||||| ||||| ||||| ||||||    
T  11135812 taacatgcgtaggggtattttggtcatttattttggaaatgagcgaaatcatttgggtaaagagcataattct 11135740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 28677941 - 28677885
Alignment:
Q  91 atttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattct 147  Q
    ||||||||||||||||||   ||||||||| | ||||| | ||||||||||||||||    
T  28677941 atttcggtcatttactttaggaatgagcgattccatttggataatgagcagaattct 28677885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 17436548 - 17436623
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattcttaa 150  Q
    ||||||| ||| | |||||||||||||||||||||  || |||||||| ||||| |||||||||||||||||||||    
T  17436548 taacatgtgtagggacatttcggtcatttactttgggaacgagcgaatccatttgggtaatgagcagaattcttaa 17436623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 4321768 - 4321815
Alignment:
Q  98 tcatttactttgaaaatgagcgaattcatttaggtaatgagcagaatt 145  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||    
T  4321768 tcatttactttgaaaatgagcgaaactatttaggtaatgagcagaatt 4321815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 35060902 - 35060973
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||| |  ||||| || ||||||||||| ||||||||| | |||||| |||||||||||||||||    
T  35060902 taacatgcgtaggggcattttggacatttactttggaaatgagcggaatcatttgggtaatgagcagaattc 35060973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 14153425 - 14153353
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattct 147  Q
    ||||||||||| |   |||| ||||||||||||||  ||||||| || |||||| ||||||||||||||||||    
T  14153425 taacatgcgtaggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaatgagcagaattct 14153353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 31522557 - 31522613
Alignment:
Q  90 catttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||||||||||||  |||||||| |  ||||| |||||||||||||||||    
T  31522557 catttcggtcatttactttgggaatgagcggaaccatttgggtaatgagcagaattc 31522613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 32274255 - 32274184
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||| |  ||||||| ||||||||||||  ||||||||||| ||||| || |||||||| |||||    
T  32274255 taacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatttgggcaatgagcataattc 32274184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 24326993 - 24326944
Alignment:
Q  97 gtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    |||||||| ||||  |||||||||||||||||  ||||||||||||||||    
T  24326993 gtcatttattttgggaatgagcgaattcatttgagtaatgagcagaattc 24326944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 8273316 - 8273245
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||| |  ||||||||||||||||||||  ||||||||||| ||||| |||||||||||||||||    
T  8273316 taacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 8273245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 12967315 - 12967266
Alignment:
Q  101 tttactttgaaaatgagcgaattcatttaggtaatgagcagaattcttaa 150  Q
    |||||||||| |||||||| |  |||||||||||||||||||||||||||    
T  12967315 tttactttgagaatgagcggaaccatttaggtaatgagcagaattcttaa 12967266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 22496083 - 22496155
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattct 147  Q
    |||||||||||||  |||||  | ||||||||||||||||||||||    |||||||||||||||| ||||||    
T  22496083 taacatgcgtaagggcattttagacatttactttgaaaatgagcgatactatttaggtaatgagcataattct 22496155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 31133226 - 31133177
Alignment:
Q  99 catttactttgaaaatgagcgaattcatttaggtaatgagcagaattctt 148  Q
    |||||||||| |||||||||||| | |||| ||||| |||||||||||||    
T  31133226 catttactttaaaaatgagcgaaatgatttgggtaaagagcagaattctt 31133177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 20685051 - 20685003
Alignment:
Q  101 tttactttgaaaatgagcgaattcatttaggtaatgagcagaattctta 149  Q
    |||||||||| |||||||| |  ||||| ||||||||||||||||||||    
T  20685051 tttactttgagaatgagcggaaccatttgggtaatgagcagaattctta 20685003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 25389872 - 25389928
Alignment:
Q  90 catttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||| ||||||||||||||| ||||||| ||| |||||  |||| |||||||||||    
T  25389872 cattttggtcatttactttgagaatgagcaaatccatttgagtaaagagcagaattc 25389928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 15040752 - 15040679
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattctt 148  Q
    ||||||||||| |  |||||| |||||||||||||  ||||||||||| ||||| |||||||||||||||||||    
T  15040752 taacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcagaattctt 15040679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 42381686 - 42381605
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattcttaatttaat 156  Q
    |||||||||||||  ||||| || ||||||||||| ||||||||||  |  ||||||||||||||||||||||| |||||||    
T  42381686 taacatgcgtaagggcattttggacatttactttggaaatgagcgatgttgtttaggtaatgagcagaattcttgatttaat 42381605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 42947446 - 42947374
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattct 147  Q
    ||||||||||| || ||||| || | |||||||||| |||||| ||| |||||||||||||||||||||||||    
T  42947446 taacatgcgtaggagcattttggacttttactttgagaatgagtgaaatcatttaggtaatgagcagaattct 42947374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 39645845 - 39645774
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||| |||||||||| ||||||||||||  ||||| ||||| ||||||| |||||||| ||||||    
T  39645845 taacatgcgtaggaacatttcgatcatttactttgcgaatgaacgaatccatttagataatgagcggaattc 39645774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 35069454 - 35069524
Alignment:
Q  76 aacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||| |||| || |||||||||||||||||||  |||||| ||||| ||||||| |||||||||||||||    
T  35069454 aacatacgtaggagcatttcggtcatttactttagaaatgaacgaatccatttagataatgagcagaattc 35069524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7665849 - 7665808
Alignment:
Q  1 acgctacttatcttaagttgcgttataatttgcactagcgca 42  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  7665849 acgctacttatcttaagttacgttataatttgcactagcgca 7665808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 34082910 - 34082845
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagca 140  Q
    ||||||||||| || ||||| | |||||||||||| |||||||||||||||||| || ||||||||    
T  34082910 taacatgcgtaggagcattttgatcatttactttggaaatgagcgaattcatttgggcaatgagca 34082845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 53814568 - 53814640
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattct 147  Q
    ||||||||||| |  ||||| | ||||||||||||  ||||||||||| ||||| ||||||||||||||||||    
T  53814568 taacatgcgtaggggcattttgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattct 53814640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 7665804 - 7665739
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagca 140  Q
    |||||||| ||||  ||||||||||||||||||||  ||||||||||| ||||| || ||||||||    
T  7665804 taacatgcataagggcatttcggtcatttactttgcgaatgagcgaatccatttgggaaatgagca 7665739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 39649889 - 39649956
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcaga 142  Q
    |||| |||||| |||||||||| ||||||||||||| ||| | || |  |||||||||||||||||||    
T  39649889 taacttgcgtatgaacatttcgatcatttactttgagaataaacggaaccatttaggtaatgagcaga 39649956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 54525857 - 54525802
Alignment:
Q  91 atttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||| ||||||||||||| ||||||||||||  |||||||||| ||||| |||||    
T  54525857 atttcagtcatttactttggaaatgagcgaatcaatttaggtaaagagcataattc 54525802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 19872185 - 19872219
Alignment:
Q  112 aatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||||||||||||||||| |||||||||    
T  19872185 aatgagcgaattcatttaggtaatgggcagaattc 19872219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 39685262 - 39685212
Alignment:
Q  96 ggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    |||| |||||||||||||||||||||  ||||| ||||||||||| |||||    
T  39685262 ggtcttttactttgaaaatgagcgaaaccatttgggtaatgagcaaaattc 39685212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19872103 - 19872144
Alignment:
Q  1 acgctacttatcttaagttgcgttataatttgcactagcgca 42  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  19872103 acgctacttatcttaagttacgttatagtttgcactaacgca 19872144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 50663946 - 50663874
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattct 147  Q
    ||||||||||| |  ||||| ||| ||||||||||  |||||||||| |||||| ||| | ||||||||||||    
T  50663946 taacatgcgtaggggcattttggttatttactttgggaatgagcgaaatcatttgggtgaagagcagaattct 50663874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 33617700 - 33617643
Alignment:
Q  90 catttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattct 147  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  33617700 catttcggtcatttactttgagaatgagcgaatccatttgggtaatgagcataattct 33617643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33401524 - 33401483
Alignment:
Q  1 acgctacttatcttaagttgcgttataatttgcactagcgca 42  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  33401524 acgctacttatcttaagttacgttataatttgcactagcgca 33401483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33617760 - 33617719
Alignment:
Q  1 acgctacttatcttaagttgcgttataatttgcactagcgca 42  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  33617760 acgctacttatcttaagttacgttataatttgcactagcgca 33617719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 33401479 - 33401407
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattct 147  Q
    |||||||| ||||  ||||||||||||||||||||| ||||||||||| |||||   ||||||||| ||||||    
T  33401479 taacatgcataagggcatttcggtcatttactttgagaatgagcgaatccatttgactaatgagcaaaattct 33401407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 28446537 - 28446608
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||| |  |||||| |||||||||||||  ||||||||||| ||||| ||||||||||| |||||    
T  28446537 taacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcaaaattc 28446608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 28476004 - 28476061
Alignment:
Q  90 catttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattct 147  Q
    ||||||| ||||||||||||| |||||||| |  ||||| ||||||||||||||||||    
T  28476004 catttcgatcatttactttgagaatgagcggaaccatttgggtaatgagcagaattct 28476061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 28474863 - 28474791
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattct 147  Q
    ||||||||||| |  |||||| |||||||| ||||  |||||| |||| ||||| ||||||||||||||||||    
T  28474863 taacatgcgtaggggcatttcagtcatttattttgggaatgagtgaatccatttgggtaatgagcagaattct 28474791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 50065534 - 50065478
Alignment:
Q  90 catttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||||||||||||  ||||||||| | ||||| ||||||||| |||||||    
T  50065534 catttcggtcatttactttgggaatgagcgattccattttggtaatgagtagaattc 50065478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 3792631 - 3792560
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    |||||||||||||  ||||| || | ||||||||| |||||||||||   |||| |||||||||||||||||    
T  3792631 taacatgcgtaagggcattttggacttttactttggaaatgagcgaaactatttgggtaatgagcagaattc 3792560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 39650267 - 39650196
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||| |  ||||| || ||||||||||   ||||||||||  |||||||||||||||||||||||    
T  39650267 taacatgcgtaggggcattttggacatttactttaggaatgagcgaaaccatttaggtaatgagcagaattc 39650196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33617944 - 33617911
Alignment:
Q  1 acgctacttatcttaagttgcgttataatttgca 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  33617944 acgctacttatcttaagttacgttataatttgca 33617911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48027058 - 48027099
Alignment:
Q  1 acgctacttatcttaagttgcgttataatttgcactagcgca 42  Q
    |||||||||||||||| || ||||||||||||||||| ||||    
T  48027058 acgctacttatcttaaattacgttataatttgcactaacgca 48027099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 5603000 - 5602944
Alignment:
Q  90 catttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||| ||||||||||||||  ||||||| ||| ||||| ||||| |||||||||||    
T  5603000 cattttggtcatttactttgggaatgagcaaatccatttgggtaaagagcagaattc 5602944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 5967244 - 5967316
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattct 147  Q
    ||||||||||| |  ||||||| ||||||||||||  ||||||||||| ||||| ||||||||||||||||||    
T  5967244 taacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattct 5967316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 5967202 - 5967240
Alignment:
Q  4 ctacttatcttaagttgcgttataatttgcactagcgca 42  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  5967202 ctacttatcttaagttacgttataatttgcactagcgca 5967240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34279523 - 34279564
Alignment:
Q  1 acgctacttatcttaagttgcgttataatttgcactagcgca 42  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  34279523 acgctacttatcttaagttacgttataatttgcactaacgca 34279564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 34279583 - 34279639
Alignment:
Q  90 catttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||| |||||||||||   ||||||||||| |||||| ||||||||||||||||    
T  34279583 catttcgatcatttactttaggaatgagcgaatccatttaagtaatgagcagaattc 34279639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 43641003 - 43641051
Alignment:
Q  98 tcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    |||||||||||| |||||||| ||  ||||| |||||||||||||||||    
T  43641003 tcatttactttggaaatgagccaaaccatttgggtaatgagcagaattc 43641051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 5179 - 5247
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaa 143  Q
    ||||||||||| |  ||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||    
T  5179 taacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggtaatgagcagaa 5247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 5061735 - 5061806
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||||  |||||||| ||||||| |||| ||||||| |||| ||||| |||||||||||||||||    
T  5061735 taacatgcgtaacgacatttcgttcatttattttggaaatgagtgaatccatttgggtaatgagcagaattc 5061806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38386290 - 38386249
Alignment:
Q  1 acgctacttatcttaagttgcgttataatttgcactagcgca 42  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  38386290 acgctacttatcttaagttacgttataatttgcactagcgca 38386249  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 19365418 - 19365473
Alignment:
Q  91 atttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    |||||||||||||  ||||  ||||||||||| |||||||||||||||||||||||    
T  19365418 atttcggtcattttatttgggaatgagcgaatccatttaggtaatgagcagaattc 19365473  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5134 - 5175
Alignment:
Q  1 acgctacttatcttaagttgcgttataatttgcactagcgca 42  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  5134 acgctgcttatcttaagttacgttataatttgcactagcgca 5175  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38047762 - 38047721
Alignment:
Q  1 acgctacttatcttaagttgcgttataatttgcactagcgca 42  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  38047762 acgctacttatcttaagttacgttataatttgtactagcgca 38047721  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 42548773 - 42548837
Alignment:
Q  82 cgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||||| |||| |||||||||||||||||||||  ||||| ||  | |||||||||||    
T  42548773 cgtaagaacattttggtcttttactttgaaaatgagcgaaaccatttgggggaagagcagaattc 42548837  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 26009440 - 26009369
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    ||||||||||| ||| |||| ||||||||||||||  ||||||| || || ||| ||||| |||||||||||    
T  26009440 taacatgcgtaggaatattttggtcatttactttgggaatgagcaaaatcgtttgggtaaagagcagaattc 26009369  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 38386245 - 38386178
Alignment:
Q  75 taacatgcgtaagaacatttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcaga 142  Q
    ||||||||||| |  ||||||  |||||||||||| |||||||||||| ||||| | |||||||||||    
T  38386245 taacatgcgtaggggcatttcaatcatttactttggaaatgagcgaatccatttggataatgagcaga 38386178  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 28138814 - 28138753
Alignment:
Q  91 atttcggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattcttaatt 152  Q
    |||| ||||||||||||||  ||||||| || |||||| ||||| |||||||||||| ||||    
T  28138814 attttggtcatttactttgggaatgagcaaaatcatttgggtaaagagcagaattctaaatt 28138753  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 33839471 - 33839520
Alignment:
Q  97 gtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattc 146  Q
    |||||||||||||| ||||||||||| ||||| | ||| |||||||||||    
T  33839471 gtcatttactttgagaatgagcgaatccatttggataaagagcagaattc 33839520  T

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Target: scaffold0246 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 2881 - 2937
Alignment:
Q  96 ggtcatttactttgaaaatgagcgaattcatttaggtaatgagcagaattcttaatt 152  Q
    |||| |||| ||||| ||||||||||  ||||| |||||||||||||||||||||||    
T  2881 ggtcttttattttgagaatgagcgaaaccatttgggtaatgagcagaattcttaatt 2937  T

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