View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3292_low_4 (Length: 228)

Name: NF3292_low_4
Description: NF3292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3292_low_4
NF3292_low_4
[»] chr3 (3 HSPs)
chr3 (3-222)||(23425794-23426013)
chr3 (5-64)||(3749224-3749283)
chr3 (7-147)||(38645892-38646032)
[»] chr6 (2 HSPs)
chr6 (1-222)||(24892477-24892698)
chr6 (7-222)||(24989300-24989515)
[»] chr7 (1 HSPs)
chr7 (2-222)||(23206504-23206724)
[»] chr1 (4 HSPs)
chr1 (11-122)||(50453190-50453301)
chr1 (7-147)||(32891712-32891852)
chr1 (5-52)||(10102494-10102541)
chr1 (7-64)||(31323771-31323828)
[»] chr5 (1 HSPs)
chr5 (7-66)||(11585762-11585821)
[»] chr4 (1 HSPs)
chr4 (8-66)||(33805276-33805334)
[»] chr8 (1 HSPs)
chr8 (128-213)||(40730152-40730237)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 23425794 - 23426013
Alignment:
Q  3 gtaattcttggtcttggatttggacattgcaggtaccggagaagtacaaatttttgatttggctggctatgcatgacgtggtgcctacactttatgtgct 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23425794 gtaattcttggtcttggatttggacattgcaggttccggagaagtacaaatttttgatttggctggctatgcatgacgtggtgcctacactttatgtgct 23425893  T
Q  103 gcatcatagaaacatggctgcgaccgcaacttgtagtagatgcggggaagatgacaaatcctttatgcactgtattcgggactgcaaattttcgaaaccc 202  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  23425894 tcatcatagaaacatggctgcgaccgcaacttgtagtagatgcggggaagatgacgaatcctttatgcactgtattcgggactgcaagttttcgaaaccc 23425993  T
Q  203 atctggcagaagcttaattt 222  Q
    ||||||||||||||||||||    
T  23425994 atctggcagaagcttaattt 23426013  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 3749283 - 3749224
Alignment:
Q  5 aattcttggtcttggatttggacattgcaggtaccggagaagtacaaatttttgatttgg 64  Q
    ||||||||||||||||||||||  ||||||||| ||||||| ||||||||||| ||||||    
T  3749283 aattcttggtcttggatttggaacttgcaggtatcggagaaatacaaattttttatttgg 3749224  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 38646032 - 38645892
Alignment:
Q  7 ttcttggtcttggatttggacattgcaggtaccggagaagtacaaatttttgatttggctggctatgcatgacgtggtgcctacactttatgtgctgcat 106  Q
    ||||||||||||||||||||  ||||| | ||||||||| |||||||| || |||||||| |||   ||||||| ||| || || || | | |||| |||    
T  38646032 ttcttggtcttggatttggaatttgcaagcaccggagaaatacaaattctttatttggctagcttgtcatgacgcggttccgactctatctttgctccat 38645933  T
Q  107 catagaaacatggctgcgaccgcaacttgtagtagatgcgg 147  Q
    |||||| |||| || ||  | ||||||||| | ||||||||    
T  38645932 catagacacatcgccgcctcagcaacttgtgggagatgcgg 38645892  T

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Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24892698 - 24892477
Alignment:
Q  1 cggtaattcttggtcttggatttggacattgcaggtaccggagaagtacaaatttttgatttggctggctatgcatgacgtggtgcctacactttatgtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24892698 cggtaattcttggtcttggatttggacattgcaggtaccggagaagtataaatttttgatttggctggctatgcatgacgtggtgcctacactttatgtg 24892599  T
Q  101 ctgcatcatagaaacatggctgcgaccgcaacttgtagtagatgcggggaagatgacaaatcctttatgcactgtattcgggactgcaaattttcgaaac 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  24892598 ctgcatcatagaaacatggctgcgaccgcaacctgtagtagatgcggagaagatgacgaatcctttatgcactgtattagggactgtaaattttcgaaac 24892499  T
Q  201 ccatctggcagaagcttaattt 222  Q
    ||||||||||||||||||||||    
T  24892498 ccatctggcagaagcttaattt 24892477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 24989515 - 24989300
Alignment:
Q  7 ttcttggtcttggatttggacattgcaggtaccggagaagtacaaatttttgatttggctggctatgcatgacgtggtgcctacactttatgtgctgcat 106  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||||||| || |||||||||| |||||||||| |||||| |||||   |||||| |||    
T  24989515 ttcttggtcttggatttggaaattacaggtaccagagaagtacaaatttctgctttggctggcaatgcatgacgcggtgccaacactaactgtgcttcat 24989416  T
Q  107 catagaaacatggctgcgaccgcaacttgtagtagatgcggggaagatgacaaatcctttatgcactgtattcgggactgcaaattttcgaaacccatct 206  Q
    ||||| ||||| | || | | ||||| ||| |||||||||| ||||| ||  |||| ||||| |||||||||||||||||||||||||| |||  |||||    
T  24989415 cataggaacatagttgagtctgcaacctgtggtagatgcggagaagaagatgaatcgtttatacactgtattcgggactgcaaattttcaaaagtcatct 24989316  T
Q  207 ggcagaagcttaattt 222  Q
    |||| |||||||||||    
T  24989315 ggcaaaagcttaattt 24989300  T

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Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 23206724 - 23206504
Alignment:
Q  2 ggtaattcttggtcttggatttggacattgcaggtaccggagaagtacaaatttttgatttggctggctatgcatgacgtggtgcctacactttatgtgc 101  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| ||| ||||||    
T  23206724 ggtatttcttggtcttggatttggactctgcaggtaccggagaagtacaaatttctgatttggctagctatgcatgacgcggtgcctactcttcatgtgc 23206625  T
Q  102 tgcatcatagaaacatggctgcgaccgcaacttgtagtagatgcggggaagatgacaaatcctttatgcactgtattcgggactgcaaattttcgaaacc 201  Q
    | |||||||||||||| |  ||| | ||||| ||||| |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||      
T  23206624 ttcatcatagaaacatagtagcggctgcaacatgtagcagatgcggggaagaagatgaatcctttatgcactgtattcgggactgcaaattttcgaaaat 23206525  T
Q  202 catctggcagaagcttaattt 222  Q
    |||||||||||||||||||||    
T  23206524 catctggcagaagcttaattt 23206504  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 50453190 - 50453301
Alignment:
Q  11 tggtcttggatttggacattgcaggtaccggagaagtacaaatttttgatttggctggctatgcatgacgtggtgcctacactttatgtgctgcatcata 110  Q
    |||||||||||||||| | | ||||  || ||||| ||||||||| | ||||||||||| || ||||||| ||| || || |||| | |||| |||||||    
T  50453190 tggtcttggatttggaaaattcaggcccctgagaaatacaaatttcttatttggctggccatacatgacgcggtaccaactctttctttgcttcatcata 50453289  T
Q  111 gaaacatggctg 122  Q
    ||||||||||||    
T  50453290 gaaacatggctg 50453301  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 32891712 - 32891852
Alignment:
Q  7 ttcttggtcttggatttggacattgcaggtaccggagaagtacaaatttttgatttggctggctatgcatgacgtggtgcctacactttatgtgctgcat 106  Q
    ||||||||||||||||||||  ||||| | ||||||||| |||||||| || |||||||| |||   ||||||| ||| || || || | | |||| |||    
T  32891712 ttcttggtcttggatttggaatttgcaagcaccggagaaatacaaattctttatttggctagcttgtcatgacgcggttccgactctatctttgctccat 32891811  T
Q  107 catagaaacatggctgcgaccgcaacttgtagtagatgcgg 147  Q
    |||||| |||| || ||  | ||||||||| | ||||||||    
T  32891812 catagacacatcgccgcctcagcaacttgtgggagatgcgg 32891852  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 10102541 - 10102494
Alignment:
Q  5 aattcttggtcttggatttggacattgcaggtaccggagaagtacaaa 52  Q
    ||||| |||||||||||||||| ||| ||||||| |||||||||||||    
T  10102541 aattcgtggtcttggatttggaaattacaggtactggagaagtacaaa 10102494  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 31323828 - 31323771
Alignment:
Q  7 ttcttggtcttggatttggacattgcaggtaccggagaagtacaaatttttgatttgg 64  Q
    ||||||||||||||||||||  ||||||||||| ||||| | |||||| || ||||||    
T  31323828 ttcttggtcttggatttggaagttgcaggtaccagagaaattcaaattcttcatttgg 31323771  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 11585821 - 11585762
Alignment:
Q  7 ttcttggtcttggatttggacattgcaggtaccggagaagtacaaatttttgatttggct 66  Q
    ||||| ||||||||||||||  ||||||||||||||||| |||||||| || ||||||||    
T  11585821 ttctttgtcttggatttggaatttgcaggtaccggagaaatacaaattctttatttggct 11585762  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 33805276 - 33805334
Alignment:
Q  8 tcttggtcttggatttggacattgcaggtaccggagaagtacaaatttttgatttggct 66  Q
    |||||||||||||||||||  |||||||| ||||| |||||||| ||| | ||||||||    
T  33805276 tcttggtcttggatttggaatttgcaggttccggaaaagtacaagtttctcatttggct 33805334  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 40730152 - 40730237
Alignment:
Q  128 gcaacttgtagtagatgcggggaagatgacaaatcctttatgcactgtattcgggactgcaaattttcgaaacccatctggcagaa 213  Q
    ||||||||| | |||||||||||||  ||  |||| || ||||| ||||||||||||| ||| ||||| || || |||||||||||    
T  40730152 gcaacttgtgggagatgcggggaagtggatgaatctttcatgcattgtattcgggactacaagttttctaagccaatctggcagaa 40730237  T

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