View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3293_high_5 (Length: 257)
Name: NF3293_high_5
Description: NF3293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3293_high_5 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 37888160 - 37887909
Alignment:
| Q |
15 |
atcatagtcaatattttgttcattgatatttcgctgccatgccaaacaatatag---------tataaaattaacaaaagatgcaaagatttgatcaaat |
105 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37888160 |
atcatagtcaatattttgtccattgatatttcgctgccatgccaaacaatatatagtataaaatataaaattaacaaaagatgcaaagatttgatcaaat |
37888061 |
T |
|
| Q |
106 |
ttcaattgggttctaatcacatctaaatcttcacattatttaaccaaaacaaatatatgcagtataggaaagtgaaatattaatatatacataatccaca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37888060 |
ttcaattgggttctaatcacatctaaatcttcacattatttaaccaaaacaaatatatgcagtataggaaagtgaaatattaatatatacataatccaca |
37887961 |
T |
|
| Q |
206 |
catcaaaagttacaaacattgaaattagtaactaatctattaaaacacgatt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37887960 |
catcaaaagttacaaacattgaaattagtaactaatctattaaaacacgatt |
37887909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University