View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3293_low_1 (Length: 595)
Name: NF3293_low_1
Description: NF3293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3293_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 19 - 582
Target Start/End: Complemental strand, 13795665 - 13795102
Alignment:
| Q |
19 |
cttatgcctttctttccaccttatgcaaacgatttgtcagaaaaccggttgcgagagaaaatacattacgcataccctacaggttctttaaatattagtc |
118 |
Q |
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| T |
13795665 |
cttatgcctttctttccaccttatgcaaacgatttgtcagaaaaccggttgcgagagaaaatacattacgcataccctacaggttctttaaatattagtc |
13795566 |
T |
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| Q |
119 |
acggttaaacgtcaatagatacttttgtatctataatatggtttgaaaaatgttaagaaatcataaggacggtgaatcaaattcaaaatgaccaaccaaa |
218 |
Q |
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| T |
13795565 |
acggttaaacgtcaatagatacttttgtatctataatatggtttgaaaaatgttaagaaatcataaggacagtgaatcaaattcaaaatgaccaaccaaa |
13795466 |
T |
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| Q |
219 |
acagaattcataggataaaataaaatcaaccaagcaatttttgcatgacctcacaatgtataataggtaaagtctatgttacaccttcacttcaaatcga |
318 |
Q |
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| T |
13795465 |
acagaattcataggataaaataaaatcaaccaagcaatttttgcatgacctcacaatgtataataggtaaactctatgttacaccttcacttcaaatcga |
13795366 |
T |
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| Q |
319 |
atacatgtttggtgtccgatacacgtccatatctatagtgacaaatgtaattacattcaaccattttcttaattattaatgttgtttacatgtcagcatt |
418 |
Q |
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| T |
13795365 |
atacatgtttggtgtccgatacacgtccatatctatagtgacaaatgtaattacattcaaccattttcttaattattaatgttgtttacatgtcagcatt |
13795266 |
T |
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| Q |
419 |
aatgtcgtcctcagtattcgaatttgtgtcagcgttaatatcgtccttatttgttatacatttacctgcaggctttcatggatggatggcaagcagcctg |
518 |
Q |
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| T |
13795265 |
aatgtcgtcctcagtattcgaatttgtgtcagcgttaatatcgtccttatttgttatacatttacctgcaggctttcatggatggatggcaagcagcctg |
13795166 |
T |
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| Q |
519 |
caagtccaaagtgcaagccaggcttctaatcccttcaggaagattccttgtttcttcaatgttc |
582 |
Q |
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| T |
13795165 |
caagtccaaagtgcaagccaggcttctaatcccttcaggaagattccttgtttcttcaatgttc |
13795102 |
T |
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