View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3293_low_10 (Length: 227)
Name: NF3293_low_10
Description: NF3293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3293_low_10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 9349421 - 9349651
Alignment:
| Q |
3 |
atcaaaatattcttcaacaaaactctttatattcaaattagtggtttagaagtaaggtgcttaccttattcttcatgctattgggagttgctcct----- |
97 |
Q |
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| T |
9349421 |
atcaaaatattcttcaacaaaactctttatattcaaattagtggtttagaagtaaggtgcttaccttattcttcatgctattgggagttgctcctttttc |
9349520 |
T |
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| Q |
98 |
-gcttgctctcgtatgataatatgttttctaatggcgcacattataagtgaaccaaatatataaaatttgtgtcggatattatacatttaactttttgaa |
196 |
Q |
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| T |
9349521 |
tgcttgctctcgtatgataatatgttttctaatggcacacgttataagtgaaccaaatatataaaatttgtgtcggatattatacattcaactttttcaa |
9349620 |
T |
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| Q |
197 |
gttcaaaatttatcattccaaatacaaagtt |
227 |
Q |
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| T |
9349621 |
gttcaaaatttatcattccaaatacaaagtt |
9349651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 9319083 - 9319313
Alignment:
| Q |
3 |
atcaaaatattcttcaacaaaactctttatattcaaattagtggtttagaagtaaggtgcttaccttattcttcatgctattgggagttgctcct----- |
97 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9319083 |
atcaaaatattcttcaacaaaactcttcatattcaaattagtggtttagaagtaaggtgcttaccttattcttcatgctattgggagttgctcctttttc |
9319182 |
T |
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| Q |
98 |
-gcttgctctcgtatgataatatgttttctaatggcgcacattataagtgaaccaaatatataaaatttgtgtcggatattatacatttaactttttgaa |
196 |
Q |
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| T |
9319183 |
tgcttgctctcgtatgataatatgttttctaatggcacacgttataagtgaaccaaatatataaaatttgtgtcggatattatacattcaactttttaaa |
9319282 |
T |
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| Q |
197 |
gttcaaaatttatcattccaaatacaaagtt |
227 |
Q |
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| T |
9319283 |
gttcaaaatttatcattccaaatacaaagtt |
9319313 |
T |
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