View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3293_low_4 (Length: 403)
Name: NF3293_low_4
Description: NF3293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3293_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 47880098 - 47880477
Alignment:
| Q |
15 |
aagtgcttagtcttttatgtatattcattgtttaccatcaattactaaaatgcatagttgttataagcaaggttttaaatagtggtttgaggtctccgtc |
114 |
Q |
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| T |
47880098 |
aagtgcttagtcttttatgtatattcattgtttaccatcaataactaaaatgcatagttgttataagcaaggttttaaatagtggtttgaggtctcagtc |
47880197 |
T |
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| Q |
115 |
acgttaaggattttgagatttcggctggtatagatgttgcagcacaggagtcacacttaatggcctaagcctaagtgaatgcgatgcagtgttgtcaaat |
214 |
Q |
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| T |
47880198 |
acgttaaggattttgagattttggctggtatagatgttgcagtacaggagtcacacttaatggcctaagcctaagtgaatgcgatgcagtgttgtcagat |
47880297 |
T |
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| Q |
215 |
agcagtactatatcatagcggaattttaaatagccatttttgctccgcgatacacgtttcagtaagtatttccattgtcaaatagcaggtatagcactgt |
314 |
Q |
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| T |
47880298 |
agcagtgctatatcataatggaattttaaatagccatttttgttccgcgatacacgtttcagtaagtatttccattgtcaaatagcaggtatagcactgt |
47880397 |
T |
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| Q |
315 |
atcattgaaaatttgaaccaactgc-----tattttatgtaatctgcgactcaca--actgatgtggtgtgagtctcttg |
387 |
Q |
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| T |
47880398 |
atcattgaaaatttgaaccaactgctattttattttatgtaatccgcgactcacaacactgatgtggtgtgagtctcttg |
47880477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 164 - 387
Target Start/End: Original strand, 13286806 - 13287031
Alignment:
| Q |
164 |
gtcacacttaatggcctaagcctaagtgaatgcgatgcagtgttgtcaaatagcagtactatatcatagcggaattttaaatagccatttttgctccgcg |
263 |
Q |
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|||||| ||||||||||||||||||||||| | |||||| ||||||||| || |||| ||||||||| ||||||||||||||||| | ||| | |||| |
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| T |
13286806 |
gtcacatttaatggcctaagcctaagtgaaggtgatgcaatgttgtcaattaacagtgttatatcataagggaattttaaatagccactattgtttcgcg |
13286905 |
T |
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| Q |
264 |
atacacgtttcagtaagtatttccattgtcaaatagcaggtatagcactgtatcattgaaaatttgaaccaactgctattttatgtaatctgcgactcac |
363 |
Q |
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||||| | || |||||||||| ||| ||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13286906 |
atacatgctttagtaagtattgtcatcatcaaatagcggctatagcactgtatcattggaaatttgaaccaactgctattttatgtaatccgcgactcac |
13287005 |
T |
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| Q |
364 |
a--actgatgtggtgtgagtctcttg |
387 |
Q |
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| T |
13287006 |
aacactgatgtggtgcgagtctcttg |
13287031 |
T |
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