View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3293_low_5 (Length: 281)
Name: NF3293_low_5
Description: NF3293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3293_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 2596852 - 2596584
Alignment:
| Q |
1 |
actttgttttacccttttcatctccttgatctagtctgtgtactaaggctataccctaaccttcctcatctattaacactacaaaatcattccttaggaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2596852 |
actttgttttacccttttcatctccttgatctagtctgtgtactaaggcta--ccctaacctttctcatctattaacactacaaaatcattccttaggaa |
2596755 |
T |
|
| Q |
101 |
aagaaatcaagcctttcctttttaagttatgacacattgattcttttaaagctttggtcctannnnnnnccttgtctcatggaatcattttacactctca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2596754 |
aagaaatcaagcctttcctttttaagttatgacacattgattcttttaaagctttggtcctatttttttccttgtctcatggaatcattttacactctca |
2596655 |
T |
|
| Q |
201 |
ttttgatgacattttcattgttgtcattggaatttcatggatcttatgctcagaatatcaaatcagttcat |
271 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2596654 |
ttttgatgacattttcattgttgtcattggaatttcatggatcttatgctcagaatatcaaatcagttcat |
2596584 |
T |
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