View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3294_high_2 (Length: 434)
Name: NF3294_high_2
Description: NF3294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3294_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 33367846 - 33368114
Alignment:
| Q |
1 |
tttgcttgtgaactgaacatcgtaagcttcgatacctgggttggactgttcgaattttgagataatatattcgttttcatcgatgaaaacagtgcggcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33367846 |
tttgcttgtgaactgaacatcgtaagcttcgatacctgggttggactgttcgaattttgagataatatattcgttttcatcgatgaaaacagtgcgacca |
33367945 |
T |
|
| Q |
101 |
ttgttattcagtgcagaccagagaagggactcttgggtgagaccaaagataaggaagttggggtttggtgtaaggtgaagagtggttgttatggcgttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33367946 |
ttgttattcagtgcagaccagagaagggactcttgggtgagaccaaagataaggaagttggggtttggtgtaaggtgaagagtggttgttatggcgttga |
33368045 |
T |
|
| Q |
201 |
tttctgaaaaggacatggatttggtggtggagttcgaggaggaggcgtagtgaaccagagctttagtta |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33368046 |
tttctgaaaaggacatggatttggtggtggagttcgaggaggaggcgtagtgaacgagagctttagtta |
33368114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 33372047 - 33372298
Alignment:
| Q |
1 |
tttgcttgtgaactgaacatcgtaagcttcgatacctgggttggactgttcgaattttgagataatatattcgttttcatcgatgaaaacagtgcggcca |
100 |
Q |
| |
|
|||| |||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
33372047 |
tttggttgtgaactgaacatcataagcttctattcctgggttggactgttcaaattttgagatcatgtattcgttttcgtcgatgaaaacagtgcggcca |
33372146 |
T |
|
| Q |
101 |
ttgttattcagtgcagaccagagaagggactcttgggtgagaccaaagataaggaagttggggtttggtgtaaggtgaagagtggttgttatggcgttga |
200 |
Q |
| |
|
|| | || ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33372147 |
ttttggtttagtgcagaccagagaagtgactcatgggtgagaccaaagatgaggaagttggggtgtggtgtaaggtgaagagtggttgttatagcgttga |
33372246 |
T |
|
| Q |
201 |
tttctgaaaaggacatggatttggtggtggagttcgaggaggaggcgtagtg |
252 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||| |||||||||| ||||| |
|
|
| T |
33372247 |
tttcttcaaaggacatggatttggtggtggtgtttaaggaggaggcatagtg |
33372298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 327 - 424
Target Start/End: Original strand, 33368172 - 33368269
Alignment:
| Q |
327 |
tcatggttgtgattagagtaagagtgaagactatagtgaagaaagtgatgatgaagataaaaagatggttagagagaaagggtactgttgttgatgat |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33368172 |
tcatggttgtgattagagtaagagtgaagactatagtgaagaaagtgatgatgaagataaaaagatggttagagagaaagggtactgttgttgatgat |
33368269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 33372372 - 33372412
Alignment:
| Q |
329 |
atggttgtgattagagtaagagtgaagactatagtgaagaa |
369 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
33372372 |
atggtggtgatgagagtgagagtgaagactatagtgaagaa |
33372412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University