View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3294_high_3 (Length: 412)
Name: NF3294_high_3
Description: NF3294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3294_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 25 - 395
Target Start/End: Original strand, 4239561 - 4239932
Alignment:
| Q |
25 |
taatacctaaatcccctttttcaataggtaagcatgatttttcccaagaggaggtgcaaccatttttagtagtgacgtcccgctccatatgaactttata |
124 |
Q |
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| T |
4239561 |
taatacctaaaccccctttttcaataggtaagcatgatttttcccaagaggtagtggaaacctttttagtagcgatgtcccgcttcatataaactttcta |
4239660 |
T |
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| Q |
125 |
aatcatccatctatttgctttaaaagtttcataggccaaagatagatgttaaaagaatagatgaacatacgatgattaatggatttgataagccaaactc |
224 |
Q |
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|| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4239661 |
aaatatccatctaattgctttaaaattttcataggccaaagatagatgttaaaagaatagatgaacatacgatgaataatggatttgataagccaaactc |
4239760 |
T |
|
| Q |
225 |
tgcccatagaagacagaagaacacctttccatgtggcaagcttaactttgattctatcacaaatctctccaaaatgtctttgtttatgttttcctttaaa |
324 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4239761 |
tgcccataaaagacagaagaacacctttccatgtggcaagcttaactttgattctatcacaaatctctccaaaatgtctttgtttatgttttccttaaaa |
4239860 |
T |
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| Q |
325 |
tatttggacaccaatatattcaaagg-atggctgatagataaaagccagtttcattaggtaaaccagtactt |
395 |
Q |
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|||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
4239861 |
tatttggacaccaatatattcaaaggaatgggtgacagataaaagccagtttcattaggtaaaccagtactt |
4239932 |
T |
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