View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3294_high_6 (Length: 231)
Name: NF3294_high_6
Description: NF3294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3294_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 33367837 - 33367623
Alignment:
| Q |
1 |
gtatccaaagttgctttctcatgcaaaagaagagtccaaacgtgatggtaagccggtacaaaatttgttattctcagaatgtaaactcggaatcaatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33367837 |
gtatccaaagttgctttctcatgcaaaagaagagtccaaacgtgattgtaagccggtacaaaatttgttattctcagaatgtaaactcggaatcaatgat |
33367738 |
T |
|
| Q |
101 |
atgccgaaccacatttaccaagtctcttgggacgtgattctagttgatgggccaagagggtactttccggcagcttcagggagaatgtcggcaatattta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33367737 |
atgccgaaccacatttaccaagtctcttgggacgtgattctagttgatgggccaagagggtactttccggcagctccagggagaatgtcggcaatattta |
33367638 |
T |
|
| Q |
201 |
ctgcggcagtgttag |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33367637 |
ctgcggcagtgttag |
33367623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 33372038 - 33371826
Alignment:
| Q |
1 |
gtatccaaagttgctttctcatgcaaaagaagagtccaaacgtgatggtaagccggtacaaaatttgttattctcagaatgtaaactcggaatcaatgat |
100 |
Q |
| |
|
|||||| ||| | |||||||||||||||| | |||| |||| ||| |||| || || || ||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
33372038 |
gtatcctaagcttctttctcatgcaaaagcaaagtctaaacacgattgtaaacctgtgcagaatttgttattctcagagtgtaaactcggaatcaacgat |
33371939 |
T |
|
| Q |
101 |
atgccgaaccacatttaccaagtctcttgggacgtgattctagttgatgggccaagagggtactttccggcagcttcagggagaatgtcggcaatattta |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| || |||| |
|
|
| T |
33371938 |
ttgccgaatcacatttaccaagtctcttgggatgtgattcttgttgatgggccaagagggtactttccggcagctccggggagaatgtcggcgatcttta |
33371839 |
T |
|
| Q |
201 |
ctgcggcagtgtt |
213 |
Q |
| |
|
| || |||||||| |
|
|
| T |
33371838 |
cagcagcagtgtt |
33371826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University