View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3294_low_1 (Length: 458)
Name: NF3294_low_1
Description: NF3294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3294_low_1 |
 | |
|
| [»] scaffold0338 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 29203472 - 29203910
Alignment:
| Q |
1 |
ttcagaacagaaaagaggatgcacttattgtggatactttcggtcgacgaatagagaaacttttgcagtaagcatttgtcactttttcatctggtttcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29203472 |
ttcagaacagaaaagaggatgcacttattgtggatactttcggtcgacgaatagagaaacttttgcagtaagcatttgtcactttttcatctggtttcag |
29203571 |
T |
|
| Q |
101 |
gacaaccatgtattttggtgatttttaggatcgataagatttttccagatattttctaaaaccactaatgtcaatattagacacagggtcagcccaaggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29203572 |
gacaaccatgtattttggtgatttttaggatcgataagatttttccagatattttctaaaaccactaatgtcaatattagacacagggtcagcccaaggg |
29203671 |
T |
|
| Q |
201 |
tcaagcgacccaagtcagagctttaggcctcaaaattttgggctaataaaatgcctcgaaaaaatttaatatagttataaacatataatatggcaaacta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29203672 |
tcaagcgacccaagtcagagctttaggcctcaaaattttgggctaataaaatgcctcgaaaaaatttaatatagttataaacatataatatggcaaacta |
29203771 |
T |
|
| Q |
301 |
attatagatgtttgtctagctcagttaggcaagatcaaggcctcaaatcctctcggtcaaacttgatattattgttctttttataagcattgtgtttatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29203772 |
attatagatgtttgtctagctcagttaggcaagatcaaggcctcaaatcctctcggtcaaacttgatattattgttctttttataagcattgtgtttatt |
29203871 |
T |
|
| Q |
401 |
tatttaaattttaaaaggcctgatcataaatttgcttta |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29203872 |
tatttaaattttaaaaggcctgatcataaatttgcttta |
29203910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 12648404 - 12647966
Alignment:
| Q |
1 |
ttcagaacagaaaagaggatgcacttattgtggatactttcggtcgacgaatagagaaacttttgcagtaagcatttgtcactttttcatctggtttcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12648404 |
ttcagaacagaaaagaggatgcacttattgtggatactttcggtcgacgaatagagaaacttttgcagtaagcatttgtcactttttcatcaggtttcag |
12648305 |
T |
|
| Q |
101 |
gacaaccatgtattttggtgatttttaggatcgataagatttttccagatattttctaaaaccactaatgtcaatattagacacagggtcagcccaaggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12648304 |
gacaaccatgtattttggtgatttttatgatcgataagatttttccagatattttctaaaaccgctaatgtcaatattagacacagggtcagcccaaggg |
12648205 |
T |
|
| Q |
201 |
tcaagcgacccaagtcagagctttaggcctcaaaattttgggctaataaaatgcctcgaaaaaatttaatatagttataaacatataatatggcaaacta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12648204 |
tcaagcgacccaagtcagagctttaggcctcaaaattttgggctgaaaaaatgcctcgaaaaaatttaatatagttataaacatataatatgacaaacta |
12648105 |
T |
|
| Q |
301 |
attatagatgtttgtctagctcagttaggcaagatcaaggcctcaaatcctctcggtcaaacttgatattattgttctttttataagcattgtgtttatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12648104 |
attatagatgtttgtctagctcagttaggcaagatcaaggcctcaaatcctctcggtcaaacttgatattattgttctttttataagcattgtgtttatt |
12648005 |
T |
|
| Q |
401 |
tatttaaattttaaaaggcctgatcataaatttgcttta |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12648004 |
tatttaaattttaaaaggcctgatcataaatttgcttta |
12647966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 21486099 - 21486052
Alignment:
| Q |
196 |
aagggtcaagcgacccaagtcagagctttaggcctcaaaattttgggc |
243 |
Q |
| |
|
||||||||||| || ||||| || |||||||||||||||||||||||| |
|
|
| T |
21486099 |
aagggtcaagcaactcaagtaagggctttaggcctcaaaattttgggc |
21486052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0338 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0338
Description:
Target: scaffold0338; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 302
Target Start/End: Complemental strand, 18424 - 18339
Alignment:
| Q |
217 |
agagctttaggcctcaaaattttgggctaataaaatgcctcgaaaaaatttaatatagttataaacatataatatggcaaactaat |
302 |
Q |
| |
|
|||| |||||||||||| |||||||| ||| |||| ||||| ||| || | ||| ||| |||||| |||||||||| || |||||| |
|
|
| T |
18424 |
agagttttaggcctcaagattttgggttaagaaaaggcctcaaaataagtcaatttagctataaatatataatatgacatactaat |
18339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 33384635 - 33384715
Alignment:
| Q |
222 |
tttaggcctcaaaattttgggctaataaaatgcctcgaaaaaatttaatatagttataaacatataatatggcaaactaat |
302 |
Q |
| |
|
|||||||||||| ||||||| ||| |||| ||||| ||| || | ||| |||||||||| |||||||||| || |||||| |
|
|
| T |
33384635 |
tttaggcctcaagattttggattaaaaaaaggcctcaaaataagtcaatttagttataaatatataatatgacatactaat |
33384715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University