View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3295_high_1 (Length: 649)
Name: NF3295_high_1
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 273 - 633
Target Start/End: Original strand, 24268298 - 24268658
Alignment:
| Q |
273 |
ataaacgcttatgatgtatgcgcttaattatgatgttaatcctaacaggacccccatggcatacatgactaaggcaaaaactgaagtgggagtaaaacaa |
372 |
Q |
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| T |
24268298 |
ataaacgcttatgatgtatgcgcttaattatgatgttaatcctaacaggacccccatggcatacatgactaaggcaaaaactgaagtgggagtaaaacca |
24268397 |
T |
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| Q |
373 |
gctccagtaatagcatcactctcatctaggggacctaatcccatccaaccaataatcctcaaggtccactctttgtttcacaaactatggcattagtgca |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24268398 |
gctccagtaatagcatcactctcatctaggggacctaatcccatccaaccaataatcctcaaggtccactctttgtttcacaaactatggcattagtgca |
24268497 |
T |
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| Q |
473 |
ttcaattactccttaatgtgtcattatcatactaaagatcatttttgtttcgattttcagcctgatattactgcaccaggtgtggacattctttatgctt |
572 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24268498 |
ttcaattactccttaatgtgtcattatcatactaaagatcatttttgtttcgattttcagcctgatattactgcaccaggtgtggacattctttatgctt |
24268597 |
T |
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| Q |
573 |
acataggagccataagtccaactggtctagcatcagataatcgtcggattccatataatat |
633 |
Q |
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| T |
24268598 |
acataggagccataagtccaactggtctagcatcagataatcaatggattccatataatat |
24268658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 24265758 - 24266023
Alignment:
| Q |
11 |
caaagggcatgaattgcaaaccacaagatcatgggaatttcttgggctagagaacaattatggagtggttcccaaagactccatatgggagaaggcaaga |
110 |
Q |
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| T |
24265758 |
caaagggcatgaattgcaaaccacaagatcatgggaatttcttgggctagagaacaattatggagtggttcccaaagactccatatgggagaagggaaga |
24265857 |
T |
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| Q |
111 |
tatggtgagggtacaatcattgctaacattgattcaggtcagtttgttatatatccccatcacattcaaaaatcaattttctataatgactttatttacc |
210 |
Q |
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| T |
24265858 |
tatggtgagggtacaatcattgctaacattgattcaggtcagtttgttatatat-cccatcacattcaaaaatcaattttctataatgactttatttacc |
24265956 |
T |
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| Q |
211 |
aacaatgatattcacacaccatttttcattaattacttttacaacactctttttaaacaataataaa |
277 |
Q |
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| T |
24265957 |
aacaatgatattcacacaccatttttcattaattacttttacaacactctttttaaacaataataaa |
24266023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 42309530 - 42309589
Alignment:
| Q |
90 |
tccatatgggagaaggcaagatatggtgagggtacaatcattgctaacattgattcaggt |
149 |
Q |
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| T |
42309530 |
tccatttgggagaaggcaagatatggtgaagacacaatcattggtaaccttgatacaggt |
42309589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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