View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3295_high_16 (Length: 360)
Name: NF3295_high_16
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 55471970 - 55471635
Alignment:
| Q |
17 |
aaaataaaattccaagaaagcttaaaaatattcaactttacatctcagatttgaaattgaaatggtatttcattctttatgtgaatttgggggaggtgaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55471970 |
aaaataaaattccaagaaagcttaaaaatatttaactttacatctcagatttgaaattgacatggtatttcattctttatgtgaatttgggggaggtgaa |
55471871 |
T |
|
| Q |
117 |
gaatagaagaaataattagaagcatatcgtaaaatccactttcctgcacttatactggaaacacttgtactcatcttcttttaaacacaataatttaatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55471870 |
gaatagaagaaataattagaagcatatcgtaaaatccattttcctgcacttatactggaaacacttgtactcatcttcttttaaacacaataatttaatt |
55471771 |
T |
|
| Q |
217 |
tgtgatgaaaaaagtcttgccctttagctaatttgattaaaactaattggagttttctgtgcatattaccttctccttcagatctccggtctgaatggct |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
55471770 |
tgtgatgaaaaaagtcttgctctttagctaatttgattaaaactaattggagttttctgtgcatattaccttctccttcagatctcaggtctgaagggct |
55471671 |
T |
|
| Q |
317 |
atgttcattgactcctaaagaatccatacctatgct |
352 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
55471670 |
atgttcattgactcctaaagaatccatacttatgct |
55471635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 163 - 343
Target Start/End: Original strand, 55439748 - 55439928
Alignment:
| Q |
163 |
cacttatactggaaacacttgtactcatcttcttttaaacacaataatttaa--tttgtgatgaaaaaagtcttgccctttagctaatttgattaaaact |
260 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||| || | | ||||||| | ||||||| ||| | |
|
|
| T |
55439748 |
cacttatactggaaacacttgtactcgtcttcttttaaacacaataattttaattttgagatgaaaaatgttt--ctctttagcaactttgatttaaagt |
55439845 |
T |
|
| Q |
261 |
aattggagttttctgtgcatattaccttctccttcagatctccggtctgaatggctatgttcattgactcctaaagaatccat |
343 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||| |||||||| |||||||| ||||||| ||| |||||||||| |
|
|
| T |
55439846 |
aattggagttttctgtgcagattaccttctccttcagagctcaggtctgaagggctatgtccattgacacctgaagaatccat |
55439928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 166
Target Start/End: Original strand, 55439548 - 55439688
Alignment:
| Q |
26 |
ttccaagaaagcttaaaaatattcaactttacatctcagatttgaaattgaaatggtatttcattctttatgtgaatttgggggaggtgaagaatagaag |
125 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| ||| | |
|
|
| T |
55439548 |
ttccaagaaagcttcaaaatacttggctttacatctcagatttgaaattgacatggtagctcattccttatgtgaatttgggggaggtgaagaagagagg |
55439647 |
T |
|
| Q |
126 |
aaataattagaagcatatcgtaaaatccactttcctgcact |
166 |
Q |
| |
|
||| |||| |||||||||||| | ||||| ||||||||||| |
|
|
| T |
55439648 |
aaagaattggaagcatatcgtgagatccattttcctgcact |
55439688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 166
Target Start/End: Original strand, 43059420 - 43059560
Alignment:
| Q |
26 |
ttccaagaaagcttaaaaatattcaactttacatctcagatttgaaattgaaatggtatttcattctttatgtgaatttgggggaggtgaagaatagaag |
125 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| ||| | |
|
|
| T |
43059420 |
ttccaagaaagcttcaaaatacttggctttacatctcagatttgaaattgacatggtagctcattccttatgtgaatttgggggaggtgaagaagagagg |
43059519 |
T |
|
| Q |
126 |
aaataattagaagcatatcgtaaaatccactttcctgcact |
166 |
Q |
| |
|
||| |||| |||||||||||| | ||||| ||||||||||| |
|
|
| T |
43059520 |
aaagaattggaagcatatcgtgagatccattttcctgcact |
43059560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University