View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3295_high_17 (Length: 352)
Name: NF3295_high_17
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 4 - 336
Target Start/End: Complemental strand, 27094060 - 27093728
Alignment:
| Q |
4 |
tgcttttgatcatgcttaaggtaaggatgcctcggattacaaccatgagcgaccaagtaaattatcatcaacgaatcgctttgaactatcatgtgttttg |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
27094060 |
tgcttttgatcatgcttaaggtaaggatgcctcggattacaaccatgagcgaccaagtaaattatgatccacgaatcgctttgaactatcatgtgttttg |
27093961 |
T |
|
| Q |
104 |
cttgatagattcaagaagagcttccagtctccaattaaagctttgccacatttgaagatcccaagtttcaagtgaatcttaccactcttcataatggttt |
203 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
27093960 |
cttgatagattcaagaagagcttctagtctccaattaaagctttgccacatttgaagattccaagtttcaagtgcatcttaccactcttcataatggttt |
27093861 |
T |
|
| Q |
204 |
cctcatcgccctacaacaactaatttgataacttcatgcctaattgacctatctacgttaaacaacttccaaagcattatgtgtagacatttaggggaaa |
303 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27093860 |
cctcatcgccctacaacaactaatttgataacttcattcctaattgacctatctacgttaaacaacttccaaagcattatgtgtagacatttagggaaaa |
27093761 |
T |
|
| Q |
304 |
aaatctcaggttccaaagcttcacctttgaaac |
336 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
27093760 |
aaatctcaggttccaaagcttcacctttgaaac |
27093728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 27090281 - 27090154
Alignment:
| Q |
13 |
tcatgcttaaggtaaggatgcctcggattacaaccatgagcgaccaagtaaattatcatcaacgaatcgctttgaactatcatgtgttttgcttgataga |
112 |
Q |
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|||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||| || ||||||||||||| |
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| T |
27090281 |
tcatgcttaaggtaaggatgcctcagattacaaccataaacgaccaagtaaattatcatccacgaatcgctttgaattatcatatgctttgcttgataga |
27090182 |
T |
|
| Q |
113 |
ttcaagaagagcttccagtctccaatta |
140 |
Q |
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||||||||||||||| |||||||||||| |
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| T |
27090181 |
ttcaagaagagcttctagtctccaatta |
27090154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 27081173 - 27080958
Alignment:
| Q |
6 |
cttttgatcatgcttaaggtaaggatgcctcggattacaaccatgagcgaccaagtaaattatcatcaacgaatcgctttgaactatcatgtgttttgct |
105 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| || | |||||||| |||||||||| |||||||||| ||||||||||| || |||||| |
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| T |
27081173 |
cttttgatcatgct-aaggtaaggatgcctcggattacaaccttgggtgaccaagtgaattatcatccacgaatcgctctgaactatcatatgctttgct |
27081075 |
T |
|
| Q |
106 |
tgatagattcaaga-------agagcttccagtctcc-aattaaagctttgccacatttgaagatcccaagtttcaagtgaatct----taccactcttc |
193 |
Q |
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|||||||||||||| |||||||| || |||| ||||||||||||||||||||||||| ||||||||||||| || || | ||||||| | | |
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| T |
27081074 |
tgatagattcaagaaatcttgagagcttctagcctccaaattaaagctttgccacatttgaaggtcccaagtttcaattgcatttcatataccactatcc |
27080975 |
T |
|
| Q |
194 |
ataatggtttcctcatc |
210 |
Q |
| |
|
||||||||||||||||| |
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| T |
27080974 |
ataatggtttcctcatc |
27080958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 27083768 - 27083659
Alignment:
| Q |
3 |
gtgcttttgatcatgcttaaggtaaggatgcctcggattacaaccatgagcgaccaagtaaattatcatcaacgaatcgctttgaactatcatgtgtttt |
102 |
Q |
| |
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|||||||| |||||||| |||||| |||||||||||||||||||| || | |||||||| |||||||||| | |||||||| |||| | |||| || ||| |
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| T |
27083768 |
gtgcttttcatcatgct-aaggtagggatgcctcggattacaaccttgggtgaccaagtgaattatcatccatgaatcgctctgaaatttcatatgcttt |
27083670 |
T |
|
| Q |
103 |
gcttgatagat |
113 |
Q |
| |
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||||||||||| |
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| T |
27083669 |
gcttgatagat |
27083659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 27083572 - 27083526
Alignment:
| Q |
235 |
cttcatgcctaattgacctatctacgttaaacaacttccaaagcatt |
281 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||||||||||||||| |
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| T |
27083572 |
cttcatgcctaattgtcccatctaaattaaacaacttccaaagcatt |
27083526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 27083620 - 27083584
Alignment:
| Q |
140 |
aaagctttgccacatttgaagatcccaagtttcaagtg |
177 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
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| T |
27083620 |
aaagctttgccacatttgaagat-ccaagtttcaagtg |
27083584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 27095341 - 27095305
Alignment:
| Q |
261 |
ttaaacaacttccaaagcattatgtgtagacatttag |
297 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| |
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| T |
27095341 |
ttaaacaacttccaaagcattctgtatagacatttag |
27095305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 41565954 - 41565891
Alignment:
| Q |
235 |
cttcatgcctaattgacctatctacgttaaacaacttccaaagcattatgtgtagacatttagg |
298 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||| |
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| T |
41565954 |
cttcatgcctaattgacccatctacattaaacaacttccaaagcattctaactagacatttagg |
41565891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 41566004 - 41565962
Alignment:
| Q |
140 |
aaagctttgccacatttgaagatcccaagtttcaagtgaatct |
182 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
41566004 |
aaagctttgccatatttgaagatcccaagtttcaagtgcatct |
41565962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 38857740 - 38857694
Alignment:
| Q |
235 |
cttcatgcctaattgacctatctacgttaaacaacttccaaagcatt |
281 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
38857740 |
cttcatgcctaattgacccatctacattaaacaacttccaaagcatt |
38857694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 38857790 - 38857753
Alignment:
| Q |
140 |
aaagctttgccacatttgaagatcccaagtttcaagtg |
177 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
38857790 |
aaagctttgccatatttgaagatcccaagtttcaagtg |
38857753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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