View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3295_high_6 (Length: 455)
Name: NF3295_high_6
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 112 - 445
Target Start/End: Complemental strand, 10857480 - 10857141
Alignment:
| Q |
112 |
tttgatcaacaaccaaaagagtatatatgttattgatcctgtacataccttttcctcaaacctcttgcgtattgtagaattcagatcaccttcccatcgt |
211 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
10857480 |
tttgatcaacaactgtaagagtatatatgttattgattttgtagatacctcttcctcaaacctcttgcgtattgtagcattcagatcaccttcccattgt |
10857381 |
T |
|
| Q |
212 |
agtgttgcatcttcga---atgtaact---gaagacaatttggttggatctatcttgttgactggacagaaagttttcatcaagatgcattgaatcaagg |
305 |
Q |
| |
|
| ||| ||||| || |||||||| |||||||||||||| ||||||||| |||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
10857380 |
ggggttttatctttgatgaatgtaactccagaagacaatttggtcggatctatcatgttgactggactgaaagttttcatccagatgcattgaatcaagg |
10857281 |
T |
|
| Q |
306 |
atactttctccaaggatggaaagcacaaggaaaacttcccagggtaaaagcaccttagctttgataaatcttttagaaacaaagtgtggaggtcctcaaa |
405 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10857280 |
acactttctccaaggatggaaagcacaaggaaaacttcccagggtaaaagcaccttagctttgataaatcttttagaaacaaagtctggaggtcctcaaa |
10857181 |
T |
|
| Q |
406 |
tattaactttttatcttcacctgattcatccccctctgtg |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10857180 |
tattaactttttatcttcacctgattcatccccctctgtg |
10857141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 151 - 445
Target Start/End: Complemental strand, 10888944 - 10888644
Alignment:
| Q |
151 |
tgtacataccttttcctcaaacctcttgcgtattgtagaattcagatcaccttcccatcgtagtgttgcatct-tcgaatgtaactg------aagacaa |
243 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||| || || | | | | | |||| ||||| || |||| |
|
|
| T |
10888944 |
tgtacatacctcttcctcaacccacttgcgtattgtagaattcagatcaacttcccattgtggt-tcacctgtgtggaatctaactcctccataatacaa |
10888846 |
T |
|
| Q |
244 |
tttggttggatctatcttgttgactggacagaaagttttcatcaagatgcattgaatcaaggatactttctccaaggatggaaagcacaaggaaaacttc |
343 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10888845 |
tttggttggatctatctcgttgactggactgaaagtattcatcgagatgcatagaatcaaggacactttctccaaggatggaaagcacaaggaaaacttc |
10888746 |
T |
|
| Q |
344 |
ccagggtaaaagcaccttagctttgataaatcttttagaaacaaagtgtggaggtcctcaaatattaactttttatcttcacctgattcatccccctctg |
443 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10888745 |
ccagaataaaagcaccttagctttgataaatcttttagaaacaaagtgcggaggtcctcaaatattaactttttatcttcacctgattcatccccctctg |
10888646 |
T |
|
| Q |
444 |
tg |
445 |
Q |
| |
|
|| |
|
|
| T |
10888645 |
tg |
10888644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University