View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3295_low_10 (Length: 418)
Name: NF3295_low_10
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Original strand, 32007604 - 32007997
Alignment:
| Q |
11 |
aatgagaagttatcattatgtaatctttttgaaacttgtattttgatacaagtacttaaacttgtatgtttatgataagatcttttgtacttggtgtatt |
110 |
Q |
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| T |
32007604 |
aatgagaagttatcattatgtaatctttttgaaacttgtattttgatacaagtacttaaacttgtatgtttatggtaagatcttttgtacttaatgtatt |
32007703 |
T |
|
| Q |
111 |
cgtgtttgatatattgtattatgtactagtcaataaaccggggtgccacaatagatcgcatgtaaatacatacataaaataatag----tatacagaaac |
206 |
Q |
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| T |
32007704 |
cgtgtttgatatattgtattatgtactagtcaataaaccggggtgtcacaatagatcacatgtaaatacatacataaaataatagtatatatatagaaac |
32007803 |
T |
|
| Q |
207 |
tatctcagttgtgctaatttacaaaacaaagctcaagtcctctttcaaacaatagcaatgcaagcttagagaattagagagatgnnnnnnntggttctta |
306 |
Q |
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| T |
32007804 |
tatctcagttgtgctaatttacaaaacaaagctcaagtcctctttcaaacaatagcaatgcaagcttagagaattagagagatgaagaaaatggttctta |
32007903 |
T |
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| Q |
307 |
cacatttattttgagtgtgatattataatataaatggatttaaaatgaacaatgttcttgaaattattgggtgtcaacacaataactaaatgac |
400 |
Q |
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| T |
32007904 |
cacatttattttgagtgtgatattataatataaatggatttaaaatgaacaatgttcttgaaattattgggtgtcaacacaataactaaatgac |
32007997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 11 - 358
Target Start/End: Original strand, 31999366 - 31999701
Alignment:
| Q |
11 |
aatgagaagttatcattatgtaatctttttgaaacttgtattttgatacaagtacttaaacttgtatgtttatgataagatcttttgtacttggtgtatt |
110 |
Q |
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| T |
31999366 |
aatgagaagttatcattatataatcttttaaaatcttgtat------acaagtacctaaacttgtatgattatggtaagatcttttgtacttactgtatc |
31999459 |
T |
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| Q |
111 |
cgtgtttgatatattgtattatgtactagtcaataaaccggggtgccacaatagatcgcatgtaaatacatacataaaataata-gtataca--gaaact |
207 |
Q |
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| T |
31999460 |
cgtgtttgatatcttgtatta-------gtcaataaaccagggtgttaaaatagatcacatgtaa-tatataca-ataatggtacgtatagatagaaact |
31999550 |
T |
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| Q |
208 |
atctcagttgtgctaatttacaaaacaaagctcaagtcctctttcaaacaatagcaatgcaagcttagagaattagagagatgnnnnnnntggttcttac |
307 |
Q |
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| T |
31999551 |
atcacaattgtgttaatttacaaa-cgaagttcaagtcctctttcaaacaatatcaacgaaagcttagagaattagagagatagagaaaatggttcttat |
31999649 |
T |
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| Q |
308 |
acatttattttgagtgtgatattataatataaatggat-ttaaaatgaacaa |
358 |
Q |
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| T |
31999650 |
gcatttattttgagtgtgatattataatataaatggatcttaaaatgaacaa |
31999701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 400
Target Start/End: Original strand, 32002099 - 32002144
Alignment:
| Q |
355 |
acaatgttcttgaaattattgggtgtcaacacaataactaaatgac |
400 |
Q |
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| T |
32002099 |
acaatgttcttgaaattatcgggtgttaacacaataattaaatgac |
32002144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 399
Target Start/End: Complemental strand, 38749933 - 38749901
Alignment:
| Q |
367 |
aaattattgggtgtcaacacaataactaaatga |
399 |
Q |
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| T |
38749933 |
aaattattgagtgtcaacacaataactaaatga |
38749901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 2013699 - 2013731
Alignment:
| Q |
368 |
aattattgggtgtcaacacaataactaaatgac |
400 |
Q |
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| T |
2013699 |
aattattgggtgtcaacacaatgactaaatgac |
2013731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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