View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3295_low_11 (Length: 406)
Name: NF3295_low_11
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 30869744 - 30869355
Alignment:
| Q |
1 |
cttgacgagtactacttgaccgatatggatgaaacactgagggaagctggttttgtgaacataaaatcaattcttaccgaccctaggcacgttactttaa |
100 |
Q |
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| T |
30869744 |
cttgacgagtactacttgaccgatatggatgaaacactgagggaagctggttttgtgaacataaaatcaattcttaccgaccctaggcacgtaactttaa |
30869645 |
T |
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| Q |
101 |
cagctactgtgcctcaatgaaacatcttgggattttgtttcctttaaaactttttggaatacacaaacaactttaagtttaatgaaaggttttacttgtt |
200 |
Q |
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| T |
30869644 |
cggctactgtgcctcaatgaaacatcttgggattttgtttcctttaaaactttttggaatacacaaacaactttaagtttaatgaaaggttttacttgtt |
30869545 |
T |
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| Q |
201 |
aggaagctttatttggttgttttttgctttgttctttggttagcttgaatggtgtatgatcaagaatagtagattaggaatgatgtttaagaaggataag |
300 |
Q |
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| T |
30869544 |
aggaagctttatttggttgttttttgctttgttctttggttagcttgaatggtgtatgatcaagaataatagattaggaatgatgtttaagaaggataag |
30869445 |
T |
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| Q |
301 |
caaacgtacataataagataatactgtacttccgaatgttagaatggatgtgcatcttacggggacaacaaaatattctttgtctgtctt |
390 |
Q |
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| T |
30869444 |
caaacgtacataataagataatactgtacttccgaatgttagaatggatgtgcatcttaaggggacaacaaaatattctttgtctgtctt |
30869355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 30861128 - 30861080
Alignment:
| Q |
103 |
gctactgtgcctcaatgaaacatcttgggattttgtttcctttaaaactt |
152 |
Q |
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| T |
30861128 |
gctactgtgcctcaatgaaa-atcttgggattttgtttcctttaaaactt |
30861080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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