View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3295_low_12 (Length: 403)
Name: NF3295_low_12
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 32007590 - 32007405
Alignment:
| Q |
1 |
agaagatatgatataaactttatcaaattatattagcaacaatatccattgtcaattaaacttcacgtaactttatctttatctttaggcttaaatgcac |
100 |
Q |
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| T |
32007590 |
agaagatatgatataaactttatcaaattatattagcaacaatatccatggtcaattaaacttcacgtaattttatctttacctttaagcttaaattgac |
32007491 |
T |
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| Q |
101 |
tttttaccacttatattttaaaatattacgattttgac-cccatnnnnnnntggatatttggacctcctagctttagccccttttg |
185 |
Q |
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| T |
32007490 |
tttttacctcttatattttaaaatattacgattttgactcccataaaaaaatggatatttgaacctcctagctttagccccttttg |
32007405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 180 - 307
Target Start/End: Complemental strand, 32006738 - 32006611
Alignment:
| Q |
180 |
cttttgtgaatggatgattttgatcaagtcaaagtctatgtgacatgtcacttaagtgatttggcatgtcaactatacaatttttattttaaattaattt |
279 |
Q |
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| T |
32006738 |
cttttgtgaatggatgattttgaccaagtcaaagcctatgtggcatgtcacttaagtgatttggcatgtcaactatacaatttttattttaaattaattt |
32006639 |
T |
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| Q |
280 |
aatatgacacacgtgtatttgttgaatt |
307 |
Q |
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| T |
32006638 |
aatatgacacacgtgtatttgttgaatt |
32006611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 32005701 - 32005792
Alignment:
| Q |
153 |
gatatttggacctcctagctttagccccttttgtgaatggatgattttgatcaagtcaaagtctatgtgacatgtcacttaagtgatttggca |
245 |
Q |
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| T |
32005701 |
gatatttggacccccaa-ctttagccccttttacaaatagatgattttgaccaagtcaaagtctatatagcatgttacttaagtgatttggca |
32005792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31999352 - 31999308
Alignment:
| Q |
1 |
agaagatatgatataaactttatcaaattatattagcaacaatat |
45 |
Q |
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| T |
31999352 |
agaagatttgatataaactttatcaaatcatattagcaacaatat |
31999308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 9760210 - 9760158
Alignment:
| Q |
85 |
ttaggcttaaatgcactttttaccacttatattttaaaatattacgattttga |
137 |
Q |
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| T |
9760210 |
ttagacttaaatgcatttttgacctcttaaattttaaaaaattacgattttga |
9760158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 28365509 - 28365565
Alignment:
| Q |
85 |
ttaggcttaaatgcactttttaccacttatattttaaaatattacgattttgacccc |
141 |
Q |
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| T |
28365509 |
ttaggctaaaatgcacttttcaccccttaaattttaaaaagttgcgattttgacccc |
28365565 |
T |
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