View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3295_low_13 (Length: 389)
Name: NF3295_low_13
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 126 - 372
Target Start/End: Complemental strand, 15649263 - 15649017
Alignment:
| Q |
126 |
gttacaaaacttagacttacgaggaaacaataccatcatttgcaagtagcacaattnnnnnnntatggacacaacgttcgttgaaggaagatccatttca |
225 |
Q |
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| T |
15649263 |
gttacaaaacttagacttacgaggaaacaataccatcatttgcaagtagcacaattaaaaaaatatggacacaacgttcgttgaaggaagatccatttca |
15649164 |
T |
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| Q |
226 |
aagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatattcatacaatcagttgactacagagtttggcttgtgattaaga |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15649163 |
aagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatattcatacaatcagttgactacagagtttggcttgtgattaaga |
15649064 |
T |
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| Q |
326 |
atggaccaaaaattccnnnnnnnttaataaatggtcgagaagtgttg |
372 |
Q |
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| T |
15649063 |
atggaccaaaaattccaaaaaaattattaaatggtcgagaagtgttg |
15649017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 189 - 341
Target Start/End: Complemental strand, 15658448 - 15658296
Alignment:
| Q |
189 |
tatggacacaacgttcgttgaaggaagatccatttcaaagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatattcata |
288 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15658448 |
tatggacacaaccatcattgaaggaagatccatttcaaagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatattcata |
15658349 |
T |
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| Q |
289 |
caatcagttgactacagagtttggcttgtgattaagaatggaccaaaaattcc |
341 |
Q |
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| T |
15658348 |
caatcagttgactataaaatttggcttgtgattaagaatggaccaaaaattcc |
15658296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 189 - 341
Target Start/End: Complemental strand, 15611564 - 15611409
Alignment:
| Q |
189 |
tatggacacaacgttcgttgaaggaagatccatttcaaagccaccatacttcgatggt---acaaactgtactgaatggaaagagcgtacaaagatattc |
285 |
Q |
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||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||| |||||||||| |
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| T |
15611564 |
tatggacacaatgatcgtggaagggagatccatttcaaagccaccatacttcgatggtacaacaaattgtactgagtggaaggagcgtataaagatattc |
15611465 |
T |
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| Q |
286 |
atacaatcagttgactacagagtttggcttgtgattaagaatggaccaaaaattcc |
341 |
Q |
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| T |
15611464 |
atacaatccgttgacttcgatctttggcttgtgattaagaatggaccgaaaattcc |
15611409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 189 - 341
Target Start/End: Complemental strand, 15628649 - 15628491
Alignment:
| Q |
189 |
tatggacacaacgttcgttgaaggaagatccatttcaaagccaccatacttcgatggt------acaaactgtactgaatggaaagagcgtacaaagata |
282 |
Q |
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||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||| |
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| T |
15628649 |
tatggacacaacgatcgtggaagggagatccatttcaaagccaccatacttcgatggtacaacaacaaattgtactgaatggaaggagcgtataaagata |
15628550 |
T |
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| Q |
283 |
ttcatacaatcagttgactacagagtttggcttgtgattaagaatggaccaaaaattcc |
341 |
Q |
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| T |
15628549 |
ttcatacaatccgttgacttcgatctctggcttgtgattaagaatggaccaaatattcc |
15628491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 205 - 372
Target Start/End: Complemental strand, 15537189 - 15537022
Alignment:
| Q |
205 |
gttgaaggaagatccatttcaaagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatattcatacaatcagttgactaca |
304 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||| || | || |||| |||||||||||| ||| ||| | |
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| T |
15537189 |
gttgaaggaagatccgtttcaaagccaccatacttcgatggtacaaatttaactgagtggagggaacctatgaagacattcatacaatctgttaacttcg |
15537090 |
T |
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| Q |
305 |
gagtttggcttgtgattaagaatggaccaaaaattccnnnnnnnttaataaatggtcgagaagtgttg |
372 |
Q |
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|||||||||||||||| |||||||||||||| |||| |||||||||||| |||||||||| |
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| T |
15537089 |
aagtttggcttgtgattgagaatggaccaaaacttccaaaaaaattaataaatggtgaagaagtgttg |
15537022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 205 - 341
Target Start/End: Complemental strand, 15524108 - 15523972
Alignment:
| Q |
205 |
gttgaaggaagatccatttcaaagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatattcatacaatcagttgactaca |
304 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||| || | || ||||||||||||||||| ||||||| |
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| T |
15524108 |
gttgaaggaagatccatttcaaagccaccatactttgatggtacaaatttaactgagtggagggaacttatgaagatattcatacaatctgttgactttg |
15524009 |
T |
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| Q |
305 |
gagtttggcttgtgattaagaatggaccaaaaattcc |
341 |
Q |
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||| |||||||||||| |||||||||||||| |||| |
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| T |
15524008 |
aagtatggcttgtgattgagaatggaccaaaacttcc |
15523972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 189 - 341
Target Start/End: Complemental strand, 15504564 - 15504412
Alignment:
| Q |
189 |
tatggacacaacgttcgttgaaggaagatccatttcaaagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatattcata |
288 |
Q |
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|||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||| || | ||| |||||||| || ||| || |||||||||| |
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| T |
15504564 |
tatggacacaaccatcaatgaaggacgatccatttcaaagccaccattcttcgatggtaacaattatacggaatggaaggaaagtataatgatattcata |
15504465 |
T |
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| Q |
289 |
caatcagttgactacagagtttggcttgtgattaagaatggaccaaaaattcc |
341 |
Q |
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||||| |||||| |||| ||||||||||||||||||||||||||||| |
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| T |
15504464 |
caatccattgactttgatctttgtcttgtgattaagaatggaccaaaaattcc |
15504412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 15649366 - 15649319
Alignment:
| Q |
17 |
gtggaaggaatctttcaaattaaaaatcatattcttgagcccaacgac |
64 |
Q |
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| T |
15649366 |
gtggaaggaatctttcaaattaaaaatcatattcttgagcccaacgac |
15649319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 15658598 - 15658557
Alignment:
| Q |
23 |
ggaatctttcaaattaaaaatcatattcttgagcccaacgac |
64 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||| |
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| T |
15658598 |
ggaatctttctcattaaaaatcatattcttgagcgcaacgac |
15658557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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