View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3295_low_14 (Length: 387)
Name: NF3295_low_14
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 12507747 - 12507388
Alignment:
| Q |
18 |
gacactaggcttctcagtttctctcccattcgaccataaaacatacttcaacaacttctcaccttctccaataaacctctttggcacaaaaatctcagca |
117 |
Q |
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| T |
12507747 |
gacagtagggttctcagtttctctcccattcgaccataaaacatatttcaacaacttctcaccttctccaataaacctctttggcacaaaaatctcagca |
12507648 |
T |
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| Q |
118 |
tcatcgaaaaccctagggtccttagtagcaaaagattggtacccgaaaatcatctcaccctttttaatttcaaaagctgcatcgtgactcttcacaatta |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12507647 |
tcatcgaaaaccctaggatccttagtagcaaaagattggtacccgaaaatcatctcaccctttttaatttcaaaagctgcatcgtgactcttcacaatta |
12507548 |
T |
|
| Q |
218 |
aatcttctcttgcttttgcatattgataacgaacgacaggttcaatcctcaaaacttcataaacaacggatttaactaacgacattttttctaacgactg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12507547 |
aatcttctcttgcttttgcatattgataacgaacgacaggttcaatcctcaaaacttcataaacaacggatttaactaatgacattttttctaacgactg |
12507448 |
T |
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| Q |
318 |
aattgttaccccgccttcgttttttacaatggttcttatctcgtttgcgagttctctgtg |
377 |
Q |
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| T |
12507447 |
aattgttaccccgccttcgttttttacaatggttcttatctcgtttgcgagttctttgtg |
12507388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 31 - 377
Target Start/End: Complemental strand, 12492804 - 12492458
Alignment:
| Q |
31 |
tcagtttctctcccattcgaccataaaacatacttcaacaacttctcaccttctccaataaacctctttggcacaaaaatctcagcatcatcgaaaaccc |
130 |
Q |
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| T |
12492804 |
tcagtttctttcccattagaccacaaaacatacttcaataacttctcaccttcgccgacaaacctcttcgccacaaaaacctcaggatcatcgaaaaccc |
12492705 |
T |
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| Q |
131 |
tagggtccttagtagcaaaagattggtacccgaaaatcatctcaccctttttaatttcaaaagctgcatcgtgactcttcacaattaaatcttctcttgc |
230 |
Q |
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|||| || || || || |||| |||||| || || ||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||| |
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| T |
12492704 |
taggatcttttgtcgcgaaaggttggtatccaaatatcatctcacccttttttatttcaaaagccgcgtcgtgactcttcacgattaaatcttctcttgc |
12492605 |
T |
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| Q |
231 |
ttttgcatattgataacgaacgacaggttcaatcctcaaaacttcataaacaacggatttaactaacgacattttttctaacgactgaattgttaccccg |
330 |
Q |
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|||||||||||||||| | || |||||||||| | || ||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
12492604 |
ttttgcatattgataaggcacagcaggttcaattcgcatcgcttcatagacaactgatttaactaacggcattttttctaacgactgaattgttactccg |
12492505 |
T |
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| Q |
331 |
ccttcgttttttacaatggttcttatctcgtttgcgagttctctgtg |
377 |
Q |
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||||| | |||||| | ||||||||||||||||||||||||| |||| |
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| T |
12492504 |
ccttcttgttttaccacggttcttatctcgtttgcgagttctttgtg |
12492458 |
T |
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