View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3295_low_19 (Length: 269)
Name: NF3295_low_19
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 38626566 - 38626327
Alignment:
| Q |
16 |
atatgtgtgagatggctcaaaacacagaaataccatttgaatgaaagatgaggcattcaaaccacttc-----tatcatatttaattatatggttgatgt |
110 |
Q |
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| T |
38626566 |
atatgtgtgagattgctcaaaacacagaaataccatttgaatgaaagatgaggcattcaaaccacttcacttctatcatata-aattatatggttgatgt |
38626468 |
T |
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| Q |
111 |
atttggtgactatagcttgagtaaattagacgaatccgacatatggtatccagttgtgagtataaataagagacgacagacatttgtttggagttttcgc |
210 |
Q |
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| T |
38626467 |
atttggtgactatagcttgagtgaattagacgaatccgacatatggtatccagttgtgagtataaataagagacgacagacatttgtttggagttttccc |
38626368 |
T |
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| Q |
211 |
agttgaacaagtgaaaagagactaagaatacatgacagaat |
251 |
Q |
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| T |
38626367 |
agttgaacaagtgaaaagagactaagaatacatgacagaat |
38626327 |
T |
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