View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3295_low_20 (Length: 261)
Name: NF3295_low_20
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 41351434 - 41351676
Alignment:
| Q |
1 |
catgcgcgtcgttgctaaatcctacatctgctgaacctcttgtttggccatctccactgaaattcatcaacgaacttaatccggaagccaaagccttgtt |
100 |
Q |
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| T |
41351434 |
catgcgcgtcgttgctaaatcctacatctgctgaacctcttgtttggccatctccactgaaattcatcaacgaacttaatccggaagccaaagccttgtt |
41351533 |
T |
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| Q |
101 |
agaacaagctttgatggacgcaaacagagaaagggagaaagacatattgaaggggaaattttaccctcttccgtctccatcacaatcggattgtgtagat |
200 |
Q |
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| T |
41351534 |
agaacaagctttgatggacgcaaacagagaaagggagaaagacatattgaaggggaaattttaccctcttccgtctccatcccaatcagattgtgtagat |
41351633 |
T |
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| Q |
201 |
gacaatatctccgaggtaatttgaatcctcctgtcctcgtgca |
243 |
Q |
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| T |
41351634 |
gacaatatctccgaggtaatttgaatcctcctgtcctcgtgca |
41351676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 23713939 - 23714078
Alignment:
| Q |
12 |
ttgctaaatcctacatctgctgaacctcttgtttggccatctccactgaaattcatcaacgaacttaatccggaagccaaagccttgttagaacaagctt |
111 |
Q |
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| T |
23713939 |
ttgctaaatctttcatctgcacagcctcttgtatggccatcatcattgaagataatcagcgagcttaatccagaggctaaagttttattagagcaggcct |
23714038 |
T |
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| Q |
112 |
tgatggacgcaaacagagaaagggagaaagacatattgaa |
151 |
Q |
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| T |
23714039 |
tgttggacgcgaacagggaaagggagaaaaacatattgaa |
23714078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 7346031 - 7345969
Alignment:
| Q |
35 |
acctcttgtttggccatctccactgaaattcatcaacgaacttaatccggaagccaaagcctt |
97 |
Q |
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| T |
7346031 |
acctcttgtttggccatctccactaaagttcatcagcgagctcaatcaagaagccaaggcctt |
7345969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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