View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3295_low_26 (Length: 232)
Name: NF3295_low_26
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_low_26 |
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| [»] scaffold0100 (1 HSPs) |
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| [»] scaffold0302 (1 HSPs) |
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| [»] scaffold0084 (1 HSPs) |
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| [»] scaffold0211 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 4286769 - 4286982
Alignment:
| Q |
1 |
gtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgattgttacaggaagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4286769 |
gtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgattgttaccggaagag |
4286868 |
T |
|
| Q |
101 |
ataatggtgcaggatcacatggtaacttttttaggattgtgccgacccaaactggtggtatctataacattcaatggtgcccaacagaggcgtgccctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4286869 |
ataatggtgcaggatcacatggtaacttttttaggattgtgcagacccaaactggtggtatctataacattcaatggtgccctacagaggcgtgccctag |
4286968 |
T |
|
| Q |
201 |
ttgtaaggttcaat |
214 |
Q |
| |
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|||||||||||||| |
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| T |
4286969 |
ttgtaaggttcaat |
4286982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 4295240 - 4295453
Alignment:
| Q |
1 |
gtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgattgttacaggaagag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4295240 |
gtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgattgttaccggaagag |
4295339 |
T |
|
| Q |
101 |
ataatggtgcaggatcacatggtaacttttttaggattgtgccgacccaaactggtggtatctataacattcaatggtgcccaacagaggcgtgccctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4295340 |
ataatggtgcaggatcacatggtaacttttttaggattgtgcagacccaaactggtggtatctataacattcaatggtgccctacagaggcgtgccctag |
4295439 |
T |
|
| Q |
201 |
ttgtaaggttcaat |
214 |
Q |
| |
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|||||||||||||| |
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| T |
4295440 |
ttgtaaggttcaat |
4295453 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 34037 - 34233
Alignment:
| Q |
18 |
cacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgattgttacaggaagagataatggtgcaggatca |
117 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||| ||||| ||||| || |||||||||||||||||| |||||||||| ||||||||||| |||||||||||| |
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| T |
34037 |
cacaagttgtgggcagtcaacagactggagattgggcgagaaagatgcaacgagtggaaggaggttgattgttaccggaagagataacggtgcaggatca |
34136 |
T |
|
| Q |
118 |
catggtaacttttttaggattgtgccgacccaaactggtggtatctataacattcaatggtgcccaacagaggcgtgccctagttgtaaggttcaat |
214 |
Q |
| |
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|| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||| |||||||| |||||||| || || ||||||||||| |||| |
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| T |
34137 |
caaggtaacttttttaggattgtgcagactcaaactggtggtacctataacattcagtggtgccctacagaggcttgtccaagttgtaaggtacaat |
34233 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 15065 - 14873
Alignment:
| Q |
18 |
cacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgattgttacaggaagagataatggtgcaggatca |
117 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||| || |||||||| || || || ||||||||||| ||||||| || |||||||||||| ||||||||||| |
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| T |
15065 |
cacaagttgtgggcagtcaacagactggagattaggtgagaaagatgctacaagtggaaggagattgattgtcactggaagagataatagtgcaggatca |
14966 |
T |
|
| Q |
118 |
cat---ggtaacttttttaggattgtgccgacccaaactggtggtatctataacattcaatggtgcccaacagaggcgtgccctagttgtaag |
207 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||| |||| | ||||||||||||||||||||| ||||||| |||||||| ||||||| |
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| T |
14965 |
caacaaggtaacttttttaggattgtgcagacccaaactagtggcaactataacattcaatggtgccctacagaggtgtgccctaattgtaag |
14873 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 17247 - 17438
Alignment:
| Q |
18 |
cacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgattgttacaggaagagataatggtgcaggatca |
117 |
Q |
| |
|
|||| |||||||| | || | |||||||| || |||||||| || ||||| ||||||||||| ||||||| || ||| |||||||||||||||||||| |
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| T |
17247 |
cacaagttgtgggaattcaagagattggacattaggtgagaaagatgcaacaagtggaaggagattgattgtcactggaggagataatggtgcaggatca |
17346 |
T |
|
| Q |
118 |
cat---ggtaacttttttaggattgtgccgacccaaactggtggtatctataacattcaatggtgcccaacagaggcgtgccctagttgtaa |
206 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||| |||| | ||||||||||||||||||||| | ||||| ||||||||||||||| |
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|
| T |
17347 |
caacaaggtaacttttttaggattgtgcagacccaaactagtggcaactataacattcaatggtgccctaaagaggtgtgccctagttgtaa |
17438 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 26070 - 25891
Alignment:
| Q |
18 |
cacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgattgttacaggaagagataatggtgcaggatca |
117 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||| || |||||||| || || || |||||||||||| ||||||| || ||||||||||||| || ||| |
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| T |
26070 |
cacaagttgtgggcagtcaacagactggagattaggtgagaaagatgctacaagtggaaggaggttgattgtcaccggaagagataatgctgaagg---- |
25975 |
T |
|
| Q |
118 |
catggtaacttttttaggattgtgccgacccaaactggtggtatctataacattcaatggtgcccaacagaggcgtgccctagttgtaa |
206 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |||||||||||||||||| || | ||||| ||||||||||||||| |
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|
| T |
25974 |
-----taacttttttaggattgtgcagacccaaactggaggtaactataacattcaatggtgtcctaaagaggtgtgccctagttgtaa |
25891 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 44442839 - 44443018
Alignment:
| Q |
24 |
ttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgattgttacaggaagagataatggtgcag---gatcacat |
120 |
Q |
| |
|
|||||||||||| |||| ||||| || || |||| ||||||||||||||| |||||||| ||| || ||||||||| ||||| ||| ||||| | |
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|
| T |
44442839 |
ttgtgggcagtcatcagaatggagattaggcgagagggacgcaacgagtggtaggaggcttattaccaccggaagagatgatggtacagttggatcattt |
44442938 |
T |
|
| Q |
121 |
ggtaacttttttaggattgtgccgacccaaactggtggtatctataacattcaatggtgcccaacagaggcgtgccctag |
200 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||| ||||||||||||||| ||||||||||| | ||| | ||||||||| |
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|
| T |
44442939 |
ggtaacttctttaggattgtgcagagccaaactcttggtatctataacatccaatggtgccctagagaagtgtgccctag |
44443018 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 21403940 - 21403755
Alignment:
| Q |
25 |
tgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgattgttacaggaagagataatggtgca---ggatcacatg |
121 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||| ||||||||||| |||||| ||| | ||| | || ||||||||| || || || |||||| ||| |
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|
| T |
21403940 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
21403841 |
T |
|
| Q |
122 |
gtaacttttttaggattgtgccgacccaaactggtggtatctataacattcaatggtgcccaacagaggcgtgccctagttgtaag |
207 |
Q |
| |
|
||||||| ||||||||||||| || | || | | ||||||| |||||| |||||||| || ||||||| ||| || ||||||||| |
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|
| T |
21403840 |
gtaacttctttaggattgtgcaaactccaagtagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaag |
21403755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 21798432 - 21798247
Alignment:
| Q |
25 |
tgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtggaaggaggctgattgttacaggaagagataatggtgca---ggatcacatg |
121 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||| ||||||||||| |||||| ||| | ||| | || ||||||||| || || || |||||| ||| |
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|
| T |
21798432 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
21798333 |
T |
|
| Q |
122 |
gtaacttttttaggattgtgccgacccaaactggtggtatctataacattcaatggtgcccaacagaggcgtgccctagttgtaag |
207 |
Q |
| |
|
||||||| ||||||||||||| || | || | | ||||||| |||||| |||||||| || ||||||| ||| || ||||||||| |
|
|
| T |
21798332 |
gtaacttctttaggattgtgcaaactccaagtagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaag |
21798247 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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