View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3295_low_27 (Length: 229)
Name: NF3295_low_27
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_low_27 |
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| [»] chr3 (7 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 988906 - 988692
Alignment:
| Q |
15 |
acagaggatgccattacacgagccaacgaagtaagcagaatggctgaaaggcaaataggattgagcgatgttggtagcggtgatggtgtctagtgggtaa |
114 |
Q |
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| T |
988906 |
acagaggatgccatcacacgagccaaggaagtaagcagaatggctgaaaggcaaataggattgagcgatgttggtagcggtgatggtgtctagtgggtaa |
988807 |
T |
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| Q |
115 |
gactcgatgatgatgtatatattagagtaggtgatgcagtgaacgttgtgcgtggttgacaggctaaggtgcttttttgcgaatttgggatcagagatta |
214 |
Q |
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| T |
988806 |
gactcgatgatgatgtatttattagagtaggtgatgcagtgaacgttgtgtgtggttgacaggctaaggtgcttttttgcgaatttgggatcagagatta |
988707 |
T |
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| Q |
215 |
aagaattccatgact |
229 |
Q |
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| T |
988706 |
aagaattccatgact |
988692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 2441329 - 2441266
Alignment:
| Q |
166 |
gtggttgacaggctaaggtgcttttttgcgaatttgggatcagagattaaagaattccatgact |
229 |
Q |
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| T |
2441329 |
gtggttgacaagctgaggtgcttcttggcgaatttgtgatcggtgattaaagaattccatgact |
2441266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 996918 - 996851
Alignment:
| Q |
162 |
gtgcgtggttgacaggctaaggtgcttttttgcgaatttgggatcagagattaaagaattccatgact |
229 |
Q |
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| T |
996918 |
gtgcctggttgacatgctaaggtgcttcttagcaaatttgggattagagattagagaactccaggact |
996851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 1013308 - 1013241
Alignment:
| Q |
162 |
gtgcgtggttgacaggctaaggtgcttttttgcgaatttgggatcagagattaaagaattccatgact |
229 |
Q |
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| T |
1013308 |
gtgcctggttgacatgctaaggtgcttcttagcaaatttgggattagagattagagaactccaggact |
1013241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 7428284 - 7428343
Alignment:
| Q |
162 |
gtgcgtggttgacaggctaaggtgcttttttgcgaatttgggatcagagattaaagaatt |
221 |
Q |
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| T |
7428284 |
gtgcttggttgacaagcgaagatgcttctctgcaaatttgggatcagagattaaagaatt |
7428343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 2491447 - 2491410
Alignment:
| Q |
184 |
tgcttttttgcgaatttgggatcagagattaaagaatt |
221 |
Q |
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| T |
2491447 |
tgcttttttgcgaatttaggatcagaaattaaagaatt |
2491410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 37758418 - 37758478
Alignment:
| Q |
162 |
gtgcgtggttgacaggctaaggtgcttttttgcgaatttgggatcagagattaaagaattc |
222 |
Q |
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| T |
37758418 |
gtgcgtggttgacatacgaagatgcttcttagcgaatttgggatccaagattaaagaattc |
37758478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 22672844 - 22672912
Alignment:
| Q |
161 |
tgtgcgtggttgacaggctaaggtgcttttttgcgaatttgggatcagagattaaagaattccatgact |
229 |
Q |
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| T |
22672844 |
tgtgcgtggttgacaggctaaggtgcttcttagcgaatttgcgatcagagattagagaattccatgact |
22672912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 24418152 - 24418206
Alignment:
| Q |
167 |
tggttgacaggctaaggtgcttttttgcgaatttgggatcagagattaaagaatt |
221 |
Q |
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| T |
24418152 |
tggttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaatgaatt |
24418206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 88498 - 88433
Alignment:
| Q |
164 |
gcgtggttgacaggctaaggtgcttttttgcgaatttgggatcagagattaaagaattccatgact |
229 |
Q |
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| T |
88498 |
gcgttgttgacatgcgaaggtgcttttttgtaaattttggatcggagattagagatttccatgact |
88433 |
T |
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