View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3295_low_28 (Length: 227)
Name: NF3295_low_28
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 42683647 - 42683427
Alignment:
| Q |
1 |
cattatcgaatgcatggaaagtgggaaagagcaccatgcatggcgagcaaccaaaatgagagaacaaagaaaatatagaagtcatcccaatcagaattga |
100 |
Q |
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| T |
42683647 |
cattatcgaatgcatggaaagtgggaaagagcaccatgcatggcgagcaaccaaaatgagagaacaaagaaaatatagaagtcatcccaatcagaattga |
42683548 |
T |
|
| Q |
101 |
tgacatgcagtaagtcagccttgcaagattggcaatcgaagcatgaaatgtttggatcgttactccaaaaatcacaatcagggttggtataagtaatatt |
200 |
Q |
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| T |
42683547 |
tgacatgcagtaagtcagccttgcaagattggcaatcgaagcatgaaatgtttggatcgttactccaaaaatcacaatcagggttggtataagtaatatt |
42683448 |
T |
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| Q |
201 |
tccgatcttgcaccatctata |
221 |
Q |
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| T |
42683447 |
tctgatcttgcaacatctata |
42683427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 42686860 - 42686773
Alignment:
| Q |
114 |
gtcagccttgcaagattggcaatcgaagcatgaaatgtttggatcgttactccaaaaatcacaatcagggttggtataagtaatattt |
201 |
Q |
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| T |
42686860 |
gtcatccttgcaacattggcaatcgaagcacgaaatgtttggattgttcttccaagcatcacaatcagggttggtataagtaacattt |
42686773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 54038890 - 54038969
Alignment:
| Q |
116 |
cagccttgcaagattggcaatcgaagcatgaaatgtttggatcgttactccaaaaatcacaatcagggttggtataagta |
195 |
Q |
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| T |
54038890 |
cagccttgcaagatttgcaattgaagcacagaacttttggatcgttagtccaagtatcacagtcagggttggtataagta |
54038969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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