View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3295_low_3 (Length: 524)
Name: NF3295_low_3
Description: NF3295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3295_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 287 - 514
Target Start/End: Original strand, 36860779 - 36861006
Alignment:
| Q |
287 |
tatgggtttgagaacattgagtttgatattagggttattattctccagtgtggaagttgtaacactcttggagaagaatgagggtctggaattgtgaatg |
386 |
Q |
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| T |
36860779 |
tatgggtttgagaacattgagtttgatattagggttattattctccagtgtggaagttgtaacactcttggagaagaatgagggtctggaattgtgaatg |
36860878 |
T |
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| Q |
387 |
tgaatcttgaatcttagataaaattttcttgttcttgggtttgggttttgggggtgagaatagaaatgggaatgattgagagaatagaagaaatttgggg |
486 |
Q |
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| T |
36860879 |
tgaatcttgaatcttagataaaattttcttgttcttgggtttgggttttgggggtgagaatagaaatgggaatgattgagagaatagaagaaatttgggg |
36860978 |
T |
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| Q |
487 |
gttttgtttaatgttttgatgatgatgt |
514 |
Q |
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| T |
36860979 |
gttttgtttaatgttttgatgatgatgt |
36861006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 36860512 - 36860697
Alignment:
| Q |
20 |
cagagaggggtgaaatggagatcggtgtttgtgaggaaaaggaaagcgattttgaaggtagggtttttggaagagagatgaaagaatttggaggggtgtg |
119 |
Q |
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| T |
36860512 |
cagagaggggtgaaatggagatcggtgtttgtgaggaaaaggaaagcgattttgaaggtagggtttttggaagagagatgaaagaatttggaggggtgtg |
36860611 |
T |
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| Q |
120 |
aagaggaagaagggggtgtagaatgtgaaatagcggtgttgaagaggttgatgtcatcgagttcatcggttggggagattggaatg |
205 |
Q |
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| T |
36860612 |
aagaggaagaagggggtgtagaatgtgaaatagcggtgttgaagaggttgatgtcatcgagttcatcggttggggagattggaatg |
36860697 |
T |
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